C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nebulin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026950 Neb 10090 - 2:52136647-52338798 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028320 Neb-002 52136662-52223737 protein_coding
  ENSMUST00000036934 Neb-201 52136647-52338798 protein_coding
  ENSMUST00000075301 Neb-001 52136662-52335134 protein_coding
  ENSMUST00000127339 Neb-011 52319634-52335762 processed_transcript
  ENSMUST00000131236 Neb-007 52173559-52176037 processed_transcript
  ENSMUST00000135200 Neb-003 52137261-52176614 protein_coding
  ENSMUST00000136769 Neb-010 52328834-52338798 processed_transcript
  ENSMUST00000137410 Neb-006 52137117-52157912 processed_transcript
  ENSMUST00000139672 Neb-004 52221782-52256156 protein_coding
  ENSMUST00000148356 Neb-012 52178046-52192520 protein_coding
  ENSMUST00000152851 Neb-009 52156341-52163009 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028320ENSMUST00000036934ENSMUST00000075301ENSMUST00000131236ENSMUST00000135200ENSMUST00000137410ENSMUST00000139672ENSMUST00000148356ENSMUST00000152851
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028320 0.075±0.03 0.061±0.02 0.238±0.09 8.571±7.36 0.031±0.00 0.119±0.00 0.165±0.21 0.287±0.18 0.500±0.66 157.648±54.92 0.428±0.21 0.065±0.03 0.068±0.03
ENSMUST00000036934 N/A 0.109±0.00 N/A 2.194±0.73 0.013±0.00 0.029±0.00 0.005±0.00 N/A N/A 29.429±0.00 0.075±0.02 N/A 0.026±0.00
ENSMUST00000075301 0.015±0.00 N/A 0.059±0.00 1.445±1.48 0.010±0.00 0.051±0.02 N/A 0.214±0.00 0.561±0.54 23.855±0.00 0.067±0.02 0.025±0.00 0.038±0.00
ENSMUST00000131236 N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000135200 N/A 0.308±0.06 0.833±0.00 N/A N/A N/A N/A N/A 0.198±0.00 459.760±72.13 1.951±1.02 0.239±0.06 0.234±0.00
ENSMUST00000137410 0.201±0.03 0.554±0.10 0.121±0.00 0.093±0.02 0.114±0.05 N/A 0.145±0.04 1.377±0.79 0.224±0.04 N/A 0.680±0.15 N/A 0.380±0.08
ENSMUST00000139672 N/A 0.055±0.00 N/A 0.030±0.00 N/A N/A 0.009±0.00 N/A N/A N/A 0.323±0.10 N/A 0.102±0.00
ENSMUST00000148356 N/A N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152851 N/A N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S6 CIL_0003S6_0003 CGP 2:52072837-52338798
CIL_0003RZ CIL_0003RZ_0003 CGP 2:52136647-52424901

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005865 TAS striated muscle thin filament
GO:0030018 IDA Z disc
GO:0030832 TAS regulation of actin filament length
GO:0043234 ISO protein complex
GO:0043292 IDA contractile fiber
GO:0045214 TAS sarcomere organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032630 neb nebulin protein_coding Danio_rerio
ENSG00000183091 NEB nebulin protein_coding Homo_sapiens

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