C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nebulin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000172853 NEB-201 ENSG00000183091 9606 - 2:151485339-151734487 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S5 CIL_0003S5_0002 CGP 2:151357592-151508013
CIL_0003S6 CIL_0003S6_0002 CGP 2:151409883-151734487
CIL_0003RZ CIL_0003RZ_0002 CGP 2:151485336-151828492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0007517 TAS muscle organ development
GO:0007525 NAS somatic muscle development
GO:0008307 TAS structural constituent of muscle
GO:0015629 TAS actin cytoskeleton
GO:0030018 IDA Z disc
GO:0030049 TAS muscle filament sliding
GO:0030832 NAS regulation of actin filament length
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075301 Neb-001 protein_coding Mus_musculus 0 15200
ENSMUST00000036934 Neb-201 protein_coding Mus_musculus 0 13080
ENSMUST00000028320 Neb-002 protein_coding Mus_musculus 0 9236
ENSMUST00000139672 Neb-004 protein_coding Mus_musculus 0 3323
ENSMUST00000137410 Neb-006 processed_transcript Mus_musculus 0 1733
ENSMUST00000127339 Neb-011 processed_transcript Mus_musculus 0 1127
ENSMUST00000135200 Neb-003 protein_coding Mus_musculus 0 1040
ENSMUST00000152851 Neb-009 processed_transcript Mus_musculus 0 769
ENSMUST00000148356 Neb-012 protein_coding Mus_musculus 0 752
ENSMUST00000131236 Neb-007 processed_transcript Mus_musculus 0 316
ENSMUST00000136769 Neb-010 processed_transcript Mus_musculus 0 309
ENSDART00000143888 neb-001 protein_coding Danio_rerio 0.0000000000001 86

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