C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-pass membrane protein with aspartate-rich tail 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183172 SMDT1 9606 + 22:42079691-42084284 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331479 SMDT1-001 42079695-42084284 protein_coding
  ENST00000422252 SMDT1-003 42079691-42083353 nonsense_mediated_decay
  ENST00000484235 SMDT1-002 42079700-42082225 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331479ENST00000422252ENST00000484235
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331479 1.687±0.00 2.228±0.00 0.291±0.00 2.837±1.90 0.843±0.71 1.411±1.01 N/A 0.940±0.00 0.368±0.00 0.155±0.00 2.242±0.07 4.706±3.55 2.124±0.00 2.677±0.00
ENST00000422252 24.403±0.00 38.914±0.00 N/A 23.869±21.69 17.392±16.62 18.424±17.21 25.893±25.22 41.189±38.38 25.364±24.56 50.515±0.00 16.346±14.45 43.323±25.72 41.793±2.72 43.851±0.28
ENST00000484235 11.033±0.00 9.849±0.00 0.793±0.00 N/A 8.658±0.00 13.467±0.00 9.018±8.15 18.212±0.00 7.762±7.34 6.657±5.87 6.538±3.33 38.279±11.31 21.348±0.90 11.507±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037D CIL_00037D_0001 CGP 22:42074251-42084284
CIL_0004BJ CIL_0004BJ_0001 CGP 22:42079691-42090955

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005739 IEA mitochondrion
GO:0006851 IMP mitochondrial calcium ion transport
GO:0031305 IDA integral component of mitochondrial inner membrane
GO:0036444 IMP calcium ion transmembrane import into mitochondrion
GO:0051560 IMP mitochondrial calcium ion homeostasis
GO:1990246 IDA uniplex complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000095826 smdt1 single-pass membrane protein with aspartate-rich tail 1 protein_coding Danio_rerio
ENSMUSG00000022452 Smdt1 single-pass membrane protein with aspartate rich tail 1 protein_coding Mus_musculus

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