C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-pass membrane protein with aspartate rich tail 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022452 Smdt1 10090 + 15:82338959-82349091 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023086 Smdt1-001 82345954-82349090 protein_coding
  ENSMUST00000159054 Smdt1-005 82347220-82348869 protein_coding
  ENSMUST00000160994 Smdt1-003 82338959-82349059 processed_transcript
  ENSMUST00000161892 Smdt1-002 82346014-82349091 nonsense_mediated_decay
  ENSMUST00000162705 Smdt1-004 82340986-82349007 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023086ENSMUST00000160994ENSMUST00000161892ENSMUST00000162705
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023086 121.293±18.72 171.689±19.99 81.026±14.11 68.684±35.17 93.300±29.19 135.360±14.16 104.068±16.81 144.734±17.00 87.131±22.77 106.296±8.16 100.070±6.01 83.452±35.08 48.420±33.30 43.474±3.33
ENSMUST00000160994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 109.045±6.47 42.519±11.14 N/A
ENSMUST00000161892 N/A N/A 18.951±2.89 42.025±0.00 10.881±0.00 N/A N/A 18.407±0.00 N/A N/A 25.642±5.33 20.469±0.21 39.299±12.25 16.983±4.76
ENSMUST00000162705 N/A N/A N/A 56.711±0.00 18.861±0.00 N/A N/A N/A N/A N/A N/A 60.970±0.00 20.436±0.33 22.123±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BB CIL_0004BB_0002 CGP 15:82329532-82345743
CIL_00037D CIL_00037D_0002 CGP 15:82338942-82349091
CIL_0004BJ CIL_0004BJ_0002 CGP 15:82338959-82354291

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0006851 ISS mitochondrial calcium ion transport
GO:0031305 ISS integral component of mitochondrial inner membrane
GO:0036444 IEA calcium ion transmembrane import into mitochondrion
GO:0051560 ISS mitochondrial calcium ion homeostasis
GO:1990246 ISS uniplex complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000095826 smdt1 single-pass membrane protein with aspartate-rich tail 1 protein_coding Danio_rerio
ENSG00000183172 SMDT1 single-pass membrane protein with aspartate-rich tail 1 protein_coding Homo_sapiens

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