C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-pass membrane protein with aspartate-rich tail 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000484235 SMDT1-002 ENSG00000183172 9606 + 22:42079700-42082225 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000484235
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000484235 11.033±0.00 9.849±0.00 0.793±0.00 8.658±0.00 13.467±0.00 9.018±8.15 18.212±0.00 7.762±7.34 6.657±5.87 6.538±3.33 38.279±11.31 21.348±0.90 11.507±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037D CIL_00037D_0001 CGP 22:42074251-42084284
CIL_0004BJ CIL_0004BJ_0001 CGP 22:42079691-42090955

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023086 Smdt1-001 protein_coding Mus_musculus 0 355
ENSMUST00000160994 Smdt1-003 processed_transcript Mus_musculus 0 198
ENSMUST00000159054 Smdt1-005 protein_coding Mus_musculus 0 196
ENSMUST00000162705 Smdt1-004 processed_transcript Mus_musculus 0 196
ENSMUST00000161892 Smdt1-002 nonsense_mediated_decay Mus_musculus 0 196

Loading