C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00037D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000177096-ENSG00000183172 CGP 9606 22:42074251-42084284
GeneTranscriptPositionBiotype
ENSG00000177096 (FAM109B)
family with sequence similarity 109, member B
ENST00000321753 (FAM109B-001) 42074251-42079441 protein_coding
ENST00000419475 (FAM109B-002) 42074357-42077618 protein_coding
ENSG00000183172 (SMDT1)
single-pass membrane protein with aspartate-rich tail 1
ENST00000331479 (SMDT1-001) 42079695-42084284 protein_coding
ENST00000422252 (SMDT1-003) 42079691-42083353 nonsense_mediated_decay
ENST00000484235 (SMDT1-002) 42079700-42082225 retained_intron
CIL_00037D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049687-ENSMUSG00000022452 CGP 10090 15:82338942-82349091
GeneTranscriptPositionBiotype
ENSMUSG00000022452 (Smdt1)
single-pass membrane protein with aspartate rich tail 1
ENSMUST00000023086 (Smdt1-001) 82345954-82349090 protein_coding
ENSMUST00000159054 (Smdt1-005) 82347220-82348869 protein_coding
ENSMUST00000160994 (Smdt1-003) 82338959-82349059 processed_transcript
ENSMUST00000161892 (Smdt1-002) 82346014-82349091 nonsense_mediated_decay
ENSMUST00000162705 (Smdt1-004) 82340986-82349007 processed_transcript
ENSMUSG00000049687 (Fam109b)
family with sequence similarity 109, member B
ENSMUST00000050349 (Fam109b-001) 82341179-82345710 protein_coding
ENSMUST00000159942 (Fam109b-004) 82338942-82343259 processed_transcript
ENSMUST00000161178 (Fam109b-002) 82340858-82345743 protein_coding
ENSMUST00000162983 (Fam109b-003) 82340553-82343273 processed_transcript
ENSMUSG00000064959 (n-R5s41)
nuclear encoded rRNA 5S 41
ENSMUST00000083025 (n-R5s41-201) 82342653-82342771 rRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00037D_0001ENSG00000177096ENST00000321753ENST00000419475ENSG00000183172ENST00000331479ENST00000422252ENST00000484235CIL_00037D_0002ENSMUSG00000022452ENSMUST00000023086ENSMUST00000159054ENSMUST00000160994ENSMUST00000161892ENSMUST00000162705ENSMUSG00000049687ENSMUST00000050349ENSMUST00000159942ENSMUST00000161178ENSMUST00000162983ENSMUSG00000064959ENSMUST00000083025
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00037D_0001ENSG00000177096ENST00000321753ENSG00000183172ENST00000331479ENST00000422252ENST00000484235CIL_00037D_0002ENSMUSG00000022452ENSMUST00000023086ENSMUST00000160994ENSMUST00000161892ENSMUST00000162705ENSMUSG00000049687ENSMUST00000050349ENSMUSG00000064959ENSMUST00000083025
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000177096 ENST00000321753 5.819±0.00 6.147±0.00 0.474±0.00 0.490±0.06 3.943±1.35 3.192±1.56 1.207±0.95 2.362±1.98 1.009±0.05 1.381±0.75 0.569±0.00 4.957±2.07 16.059±5.87 3.797±0.00
ENST00000419475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000183172 ENST00000331479 1.687±0.00 2.228±0.00 0.291±0.00 2.837±1.90 0.843±0.71 1.411±1.01 N/A 0.940±0.00 0.368±0.00 0.155±0.00 2.242±0.07 4.706±3.55 2.124±0.00 2.677±0.00
ENST00000422252 24.403±0.00 38.914±0.00 N/A 23.869±21.69 17.392±16.62 18.424±17.21 25.893±25.22 41.189±38.38 25.364±24.56 50.515±0.00 16.346±14.45 43.323±25.72 41.793±2.72 43.851±0.28
ENST00000484235 11.033±0.00 9.849±0.00 0.793±0.00 N/A 8.658±0.00 13.467±0.00 9.018±8.15 18.212±0.00 7.762±7.34 6.657±5.87 6.538±3.33 38.279±11.31 21.348±0.90 11.507±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022452 ENSMUST00000023086 121.293±18.72 171.689±19.99 81.026±14.11 68.684±35.17 93.300±29.19 135.360±14.16 104.068±16.81 144.734±17.00 87.131±22.77 106.296±8.16 100.070±6.01 83.452±35.08 48.420±33.30 43.474±3.33
ENSMUST00000159054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 109.045±6.47 42.519±11.14 N/A
ENSMUST00000161892 N/A N/A 18.951±2.89 42.025±0.00 10.881±0.00 N/A N/A 18.407±0.00 N/A N/A 25.642±5.33 20.469±0.21 39.299±12.25 16.983±4.76
ENSMUST00000162705 N/A N/A N/A 56.711±0.00 18.861±0.00 N/A N/A N/A N/A N/A N/A 60.970±0.00 20.436±0.33 22.123±0.00
ENSMUSG00000049687 ENSMUST00000050349 5.105±0.00 N/A N/A N/A 2.098±0.00 N/A N/A N/A 21.788±9.17 N/A N/A 2.448±1.26 3.756±0.00 2.930±0.60
ENSMUST00000159942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064959 ENSMUST00000083025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.650±0.00 5.047±0.00 N/A

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