C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: single-pass membrane protein with aspartate-rich tail 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422252 SMDT1-003 ENSG00000183172 9606 + 22:42079691-42083353 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000422252
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000422252 24.403±0.00 38.914±0.00 23.869±21.69 17.392±16.62 18.424±17.21 25.893±25.22 41.189±38.38 25.364±24.56 50.515±0.00 16.346±14.45 43.323±25.72 41.793±2.72 43.851±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037D CIL_00037D_0001 CGP 22:42074251-42084284
CIL_0004BJ CIL_0004BJ_0001 CGP 22:42079691-42090955

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161892 Smdt1-002 nonsense_mediated_decay Mus_musculus 0 281
ENSMUST00000159054 Smdt1-005 protein_coding Mus_musculus 0 202
ENSMUST00000162705 Smdt1-004 processed_transcript Mus_musculus 0 198
ENSMUST00000160994 Smdt1-003 processed_transcript Mus_musculus 0 196
ENSMUST00000023086 Smdt1-001 protein_coding Mus_musculus 0 196

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