C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004BJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000183172-ENSG00000184983 CGP 9606 22:42079691-42090955
GeneTranscriptPositionBiotype
ENSG00000183172 (SMDT1)
single-pass membrane protein with aspartate-rich tail 1
ENST00000331479 (SMDT1-001) 42079695-42084284 protein_coding
ENST00000422252 (SMDT1-003) 42079691-42083353 nonsense_mediated_decay
ENST00000484235 (SMDT1-002) 42079700-42082225 retained_intron
ENSG00000184983 (NDUFA6)
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa
ENST00000470753 (NDUFA6-002) 42086116-42087335 protein_coding
ENST00000498737 (NDUFA6-001) 42085525-42090955 protein_coding
ENST00000602404 (NDUFA6-003) 42085525-42090779 protein_coding
ENST00000617763 (NDUFA6-201) 42085527-42090884 protein_coding
ENSG00000270083 (RP1-257I20.14)
ENST00000602718 (RP1-257I20.14-001) 42089630-42090028 sense_intronic
CIL_0004BJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022452-ENSMUSG00000022450 CGP 10090 15:82338959-82354291
GeneTranscriptPositionBiotype
ENSMUSG00000022450 (Ndufa6)
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)
ENSMUST00000023085 (Ndufa6-201) 82350139-82354291 protein_coding
ENSMUSG00000022452 (Smdt1)
single-pass membrane protein with aspartate rich tail 1
ENSMUST00000023086 (Smdt1-001) 82345954-82349090 protein_coding
ENSMUST00000159054 (Smdt1-005) 82347220-82348869 protein_coding
ENSMUST00000160994 (Smdt1-003) 82338959-82349059 processed_transcript
ENSMUST00000161892 (Smdt1-002) 82346014-82349091 nonsense_mediated_decay
ENSMUST00000162705 (Smdt1-004) 82340986-82349007 processed_transcript
ENSMUSG00000049687 (Fam109b)
family with sequence similarity 109, member B
ENSMUST00000050349 (Fam109b-001) 82341179-82345710 protein_coding
ENSMUST00000159942 (Fam109b-004) 82338942-82343259 processed_transcript
ENSMUST00000161178 (Fam109b-002) 82340858-82345743 protein_coding
ENSMUST00000162983 (Fam109b-003) 82340553-82343273 processed_transcript
ENSMUSG00000064959 (n-R5s41)
nuclear encoded rRNA 5S 41
ENSMUST00000083025 (n-R5s41-201) 82342653-82342771 rRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004BJ_0001ENSG00000183172ENST00000331479ENST00000422252ENST00000484235ENSG00000184983ENST00000470753ENST00000498737ENST00000602404ENST00000617763ENSG00000270083ENST00000602718CIL_0004BJ_0002ENSMUSG00000022450ENSMUST00000023085ENSMUSG00000022452ENSMUST00000023086ENSMUST00000159054ENSMUST00000160994ENSMUST00000161892ENSMUST00000162705ENSMUSG00000049687ENSMUST00000050349ENSMUST00000159942ENSMUST00000161178ENSMUST00000162983ENSMUSG00000064959ENSMUST00000083025
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004BJ_0001ENSG00000183172ENST00000331479ENST00000422252ENST00000484235ENSG00000184983ENST00000470753ENST00000602404ENSG00000270083ENST00000602718CIL_0004BJ_0002ENSMUSG00000022450ENSMUST00000023085ENSMUSG00000022452ENSMUST00000023086ENSMUST00000160994ENSMUST00000161892ENSMUST00000162705ENSMUSG00000049687ENSMUST00000050349ENSMUSG00000064959ENSMUST00000083025
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183172 ENST00000331479 1.687±0.00 2.228±0.00 0.291±0.00 2.837±1.90 0.843±0.71 1.411±1.01 N/A 0.940±0.00 0.368±0.00 0.155±0.00 2.242±0.07 4.706±3.55 2.124±0.00 2.677±0.00
ENST00000422252 24.403±0.00 38.914±0.00 N/A 23.869±21.69 17.392±16.62 18.424±17.21 25.893±25.22 41.189±38.38 25.364±24.56 50.515±0.00 16.346±14.45 43.323±25.72 41.793±2.72 43.851±0.28
ENST00000484235 11.033±0.00 9.849±0.00 0.793±0.00 N/A 8.658±0.00 13.467±0.00 9.018±8.15 18.212±0.00 7.762±7.34 6.657±5.87 6.538±3.33 38.279±11.31 21.348±0.90 11.507±0.00
ENSG00000184983 ENST00000470753 10.092±0.00 N/A N/A 14.206±0.00 4.507±0.00 15.176±0.00 22.207±10.26 17.129±0.00 20.462±11.20 15.588±0.00 25.252±0.51 23.342±16.22 32.129±0.00 35.779±0.00
ENST00000498737 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602404 24.574±0.00 40.145±0.00 8.850±0.00 39.616±10.99 25.925±19.96 30.023±15.95 46.493±21.72 46.555±33.00 17.911±7.96 14.461±4.82 37.002±6.42 27.755±12.81 39.589±12.82 35.710±18.43
ENST00000617763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000270083 ENST00000602718 0.164±0.00 0.675±0.00 2.073±0.00 0.319±0.15 0.271±0.00 0.742±0.00 0.212±0.06 0.831±0.00 0.428±0.00 1.562±0.26 N/A 0.719±0.21 0.351±0.06 0.767±0.39
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022450 ENSMUST00000023085 181.289±29.84 260.541±41.56 204.706±18.14 93.419±45.46 144.642±67.53 252.333±27.28 363.190±24.60 305.103±120.19 277.104±50.81 108.211±8.01 322.556±15.94 223.105±64.43 77.770±46.01 116.960±46.86
ENSMUSG00000022452 ENSMUST00000023086 121.293±18.72 171.689±19.99 81.026±14.11 68.684±35.17 93.300±29.19 135.360±14.16 104.068±16.81 144.734±17.00 87.131±22.77 106.296±8.16 100.070±6.01 83.452±35.08 48.420±33.30 43.474±3.33
ENSMUST00000159054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 109.045±6.47 42.519±11.14 N/A
ENSMUST00000161892 N/A N/A 18.951±2.89 42.025±0.00 10.881±0.00 N/A N/A 18.407±0.00 N/A N/A 25.642±5.33 20.469±0.21 39.299±12.25 16.983±4.76
ENSMUST00000162705 N/A N/A N/A 56.711±0.00 18.861±0.00 N/A N/A N/A N/A N/A N/A 60.970±0.00 20.436±0.33 22.123±0.00
ENSMUSG00000049687 ENSMUST00000050349 5.105±0.00 N/A N/A N/A 2.098±0.00 N/A N/A N/A 21.788±9.17 N/A N/A 2.448±1.26 3.756±0.00 2.930±0.60
ENSMUST00000159942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064959 ENSMUST00000083025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.650±0.00 5.047±0.00 N/A

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