C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 33 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333371 VPS33B-001 ENSG00000184056 9606 - 15:90998416-91022603 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333371
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333371 0.477±0.00 1.291±0.00 2.093±0.22 0.478±0.00 0.249±0.00 0.298±0.00 0.919±0.22 0.352±0.00 0.539±0.09 0.545±0.00 1.920±0.49 1.375±0.22 1.030±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0001 VISTA 15:90522657-91123707
CIL_0001XZ CIL_0001XZ_0002 CGP 15:90966038-91022603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005764 IDA lysosome
GO:0005770 IDA late endosome
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0015031 IMP protein transport
GO:0016192 IDA:IEA vesicle-mediated transport
GO:0030897 IDA HOPS complex
GO:0031091 IDA platelet alpha granule
GO:0032400 IDA melanosome localization
GO:0032418 IDA lysosome localization
GO:0048471 IDA perinuclear region of cytoplasm
GO:0061025 IMP membrane fusion
GO:0070889 IMP platelet alpha granule organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032749 Vps33b-001 protein_coding Mus_musculus 0 2586
ENSMUST00000150585 Vps33b-002 nonsense_mediated_decay Mus_musculus 0 2512
ENSMUST00000135053 Vps33b-003 nonsense_mediated_decay Mus_musculus 0 2209
ENSMUST00000128254 Vps33b-005 retained_intron Mus_musculus 0 1450
ENSMUST00000135470 Vps33b-006 retained_intron Mus_musculus 2e-34 152

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