C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 33 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000574755 VPS33B-004 ENSG00000184056 9606 - 15:90998675-91022513 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000574755
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000574755 0.810±0.00 2.163±0.00 0.854±0.30 0.236±0.00 1.017±0.13 1.130±0.29 1.175±0.82 1.137±0.00 2.896±0.25 2.905±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0001 VISTA 15:90522657-91123707
CIL_0001XZ CIL_0001XZ_0002 CGP 15:90966038-91022603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000135053 Vps33b-003 nonsense_mediated_decay Mus_musculus 0 2505
ENSMUST00000032749 Vps33b-001 protein_coding Mus_musculus 0 2209
ENSMUST00000150585 Vps33b-002 nonsense_mediated_decay Mus_musculus 0 2135
ENSMUST00000128254 Vps33b-005 retained_intron Mus_musculus 0 1075
ENSMUST00000135470 Vps33b-006 retained_intron Mus_musculus 1e-34 152

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