C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 33 homolog B (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000535906 VPS33B-003 ENSG00000184056 9606 - 15:90998675-91022596 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000535906
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000535906 2.031±0.00 5.701±0.00 7.503±0.00 2.699±0.00 2.831±0.00 1.090±0.00 3.459±0.00 1.684±0.00 1.003±0.00 1.180±0.00 2.567±0.31 3.583±0.49 4.384±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0001 VISTA 15:90522657-91123707
CIL_0001XZ CIL_0001XZ_0002 CGP 15:90966038-91022603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032749 Vps33b-001 protein_coding Mus_musculus 0 2292
ENSMUST00000150585 Vps33b-002 nonsense_mediated_decay Mus_musculus 0 2218
ENSMUST00000135053 Vps33b-003 nonsense_mediated_decay Mus_musculus 0 2209
ENSMUST00000128254 Vps33b-005 retained_intron Mus_musculus 0 1158
ENSMUST00000135470 Vps33b-006 retained_intron Mus_musculus 2e-34 152

Loading