C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355765 PRPF39-003 ENSG00000185246 9606 + 14:45084099-45115601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000355765
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000355765 1.651±0.00 2.376±0.00 3.915±0.00 4.300±0.00 2.946±0.74 0.655±0.00 5.545±0.00 1.407±0.00 1.133±0.00 8.502±0.92 2.925±1.38 5.995±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046Q CIL_00046Q_0001 CGP 14:44962208-45116282
CIL_0005HK CIL_0005HK_0002 CGP 14:45084099-45135319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120580 Prpf39-001 protein_coding Mus_musculus 0 2988
ENSMUST00000129956 Prpf39-002 nonsense_mediated_decay Mus_musculus 0 1105

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