C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-mRNA processing factor 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477626 PRPF39-002 ENSG00000185246 9606 + 14:45084118-45115601 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLungOvaryENST00000477626
Transcript ID Adrenal Brain Breast Colon Kidney Lung Ovary
ENST00000477626 1.722±0.00 2.195±0.00 2.492±0.00 4.081±0.00 1.630±0.00 2.195±0.00 2.298±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046Q CIL_00046Q_0001 CGP 14:44962208-45116282
CIL_0005HK CIL_0005HK_0002 CGP 14:45084099-45135319

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120580 Prpf39-001 protein_coding Mus_musculus 0 2440
ENSMUST00000129956 Prpf39-002 nonsense_mediated_decay Mus_musculus 0 1105

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