C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00046Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198718-ENSG00000185246 CGP 9606 14:44962208-45116282
GeneTranscriptPositionBiotype
ENSG00000185246 (PRPF39)
pre-mRNA processing factor 39 		ENST00000355765 (PRPF39-003) 45084099-45115601 protein_coding
ENST00000424478 (PRPF39-001) 45084128-45115601 nonsense_mediated_decay
ENST00000477626 (PRPF39-002) 45084118-45115601 retained_intron
ENST00000553605 (PRPF39-009) 45084107-45096228 protein_coding
ENST00000554081 (PRPF39-007) 45096198-45116282 nonsense_mediated_decay
ENST00000554429 (PRPF39-006) 45095239-45115601 nonsense_mediated_decay
ENST00000554439 (PRPF39-004) 45095221-45115634 nonsense_mediated_decay
ENST00000554785 (PRPF39-008) 45109732-45115596 retained_intron
ENST00000556353 (PRPF39-013) 45095446-45096866 retained_intron
ENST00000556718 (PRPF39-012) 45109743-45110669 retained_intron
ENST00000556782 (PRPF39-010) 45084118-45095733 retained_intron
ENST00000557477 (PRPF39-011) 45096906-45110176 nonsense_mediated_decay
ENSG00000198718 (FAM179B)
family with sequence similarity 179, member B 		ENST00000361462 (FAM179B-002) 44962239-45074431 protein_coding
ENST00000361577 (FAM179B-001) 44962208-45074431 protein_coding
ENST00000555586 (FAM179B-006) 45025473-45027334 retained_intron
ENST00000555607 (FAM179B-004) 44962214-45008147 retained_intron
ENST00000555874 (FAM179B-007) 44995480-45004288 protein_coding
ENST00000555945 (FAM179B-005) 44962219-44997404 retained_intron
ENST00000556105 (FAM179B-009) 45011887-45028296 retained_intron
ENST00000556823 (FAM179B-010) 45068442-45073803 protein_coding
ENST00000557250 (FAM179B-008) 44995819-45006267 protein_coding
ENST00000557423 (FAM179B-003) 44962213-45074431 nonsense_mediated_decay
ENSG00000239043 (SNORD127)
small nucleolar RNA, C/D box 127 		ENST00000458892 (SNORD127-201) 45110883-45110968 snoRNA
ENSG00000249163 (CTD-3028N15.1)
 ENST00000556389 (CTD-3028N15.1-001) 45083045-45083977 antisense
ENSG00000278147 (CTD-3028N15.3)
 ENST00000613169 (CTD-3028N15.3-001) 45079849-45080189 lincRNA
CIL_00046Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035614-ENSMUSG00000035597 CGP 10090 12:64965742-65063386
GeneTranscriptPositionBiotype
ENSMUSG00000020949 (Fkbp3)
FK506 binding protein 3 		ENSMUST00000021332 (Fkbp3-201) 65062436-65073944 protein_coding
ENSMUSG00000035597 (Prpf39)
PRP39 pre-mRNA processing factor 39 homolog (yeast) 		ENSMUST00000120580 (Prpf39-001) 65036333-65063386 protein_coding
ENSMUST00000129956 (Prpf39-002) 65036366-65063386 nonsense_mediated_decay
ENSMUSG00000035614 (Fam179b)
family with sequence similarity 179, member B 		ENSMUST00000066296 (Fam179b-201) 64965742-65022573 protein_coding
ENSMUSG00000087790 (Gm25970)
predicted gene, 25970 		ENSMUST00000157165 (Gm25970-201) 65056573-65056658 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00046Q_0001ENSG00000185246ENST00000355765ENST00000424478ENST00000477626ENST00000553605ENST00000554081ENST00000554429ENST00000554439ENST00000554785ENST00000556353ENST00000556718ENST00000556782ENST00000557477ENSG00000198718ENST00000361462ENST00000361577ENST00000555586ENST00000555607ENST00000555874ENST00000555945ENST00000556105ENST00000556823ENST00000557250ENST00000557423ENSG00000239043ENST00000458892ENSG00000249163ENST00000556389ENSG00000278147ENST00000613169CIL_00046Q_0002ENSMUSG00000020949ENSMUST00000021332ENSMUSG00000035597ENSMUST00000120580ENSMUST00000129956ENSMUSG00000035614ENSMUST00000066296ENSMUSG00000087790ENSMUST00000157165
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00046Q_0001ENSG00000185246ENST00000355765ENST00000424478ENST00000477626ENST00000554429ENST00000554439ENSG00000198718ENST00000361462ENST00000361577ENST00000555607ENST00000555945ENST00000557423ENSG00000239043ENST00000458892ENSG00000249163ENST00000556389ENSG00000278147ENST00000613169CIL_00046Q_0002ENSMUSG00000020949ENSMUST00000021332ENSMUSG00000035597ENSMUST00000120580ENSMUST00000129956ENSMUSG00000035614ENSMUST00000066296ENSMUSG00000087790ENSMUST00000157165
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000185246 ENST00000355765 1.651±0.00 2.376±0.00 N/A 3.915±0.00 4.300±0.00 2.946±0.74 0.655±0.00 5.545±0.00 N/A 1.407±0.00 1.133±0.00 8.502±0.92 2.925±1.38 5.995±0.90
ENST00000424478 N/A N/A 2.062±0.00 N/A N/A N/A 0.628±0.00 N/A N/A 1.762±0.00 N/A N/A N/A N/A
ENST00000477626 N/A 1.722±0.00 N/A 2.195±0.00 2.492±0.00 4.081±0.00 N/A 1.630±0.00 N/A 2.195±0.00 N/A 2.298±0.00 N/A N/A
ENST00000553605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554429 N/A 2.862±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554439 N/A N/A N/A N/A 1.614±0.00 N/A N/A N/A 1.556±0.00 1.936±0.00 N/A N/A N/A N/A
ENST00000554785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000198718 ENST00000361462 0.606±0.00 0.786±0.00 N/A 5.118±2.64 1.564±0.88 1.018±0.00 1.685±0.71 1.704±0.33 0.401±0.00 1.671±0.85 1.204±0.00 3.800±1.03 0.616±0.11 2.167±0.00
ENST00000361577 N/A N/A 0.867±0.00 N/A N/A 2.288±0.00 1.602±0.00 N/A 3.928±0.00 N/A 1.078±0.00 N/A N/A N/A
ENST00000555586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555607 N/A N/A 1.347±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555945 N/A N/A 0.946±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557423 0.512±0.00 1.090±0.00 1.018±0.00 N/A 0.874±0.32 N/A N/A N/A N/A 0.662±0.00 N/A 1.235±0.41 0.925±0.00 2.194±0.00
ENSG00000239043 ENST00000458892 N/A 0.469±0.00 N/A 0.221±0.00 N/A N/A 0.226±0.00 N/A N/A N/A N/A N/A 1.986±0.00 0.853±0.00
ENSG00000249163 ENST00000556389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.431±3.73
ENSG00000278147 ENST00000613169 N/A 0.084±0.00 N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A 0.105±0.02 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020949 ENSMUST00000021332 9.022±1.57 10.302±1.03 31.634±0.80 89.693±32.60 8.927±1.11 4.525±0.31 60.601±6.67 17.657±5.29 32.742±27.46 9.912±1.69 104.439±7.07 41.479±34.76 78.337±23.15 10.124±8.98
ENSMUSG00000035597 ENSMUST00000120580 N/A 1.589±0.33 10.770±0.56 8.025±1.94 1.885±0.00 2.466±1.21 2.125±0.42 1.226±0.00 5.558±2.46 4.553±0.00 3.162±0.13 9.946±1.35 7.303±1.27 1.019±0.31
ENSMUST00000129956 1.723±0.00 2.508±0.31 2.825±0.01 N/A 2.118±0.51 1.289±0.06 N/A 1.171±0.00 1.461±0.03 N/A N/A 3.754±1.38 2.700±0.58 0.635±0.00
ENSMUSG00000035614 ENSMUST00000066296 2.192±0.72 8.936±0.47 3.677±0.70 4.362±1.30 3.228±2.07 0.997±0.50 1.223±0.16 2.245±0.94 1.486±0.66 3.720±1.59 1.172±0.26 4.329±2.48 3.793±1.14 4.145±1.81
ENSMUSG00000087790 ENSMUST00000157165 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 121.535±0.00 N/A

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