C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc and ring finger 1, E3 ubiquitin protein ligase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186187 ZNRF1 9606 + 16:74999030-75110994 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320619 ZNRF1-001 74999037-75108707 protein_coding
  ENST00000335325 ZNRF1-002 74999030-75110994 protein_coding
  ENST00000564320 ZNRF1-008 75000242-75107774 processed_transcript
  ENST00000566244 ZNRF1-004 75104060-75108039 retained_intron
  ENST00000566250 ZNRF1-003 74999345-75105005 protein_coding
  ENST00000567962 ZNRF1-007 74999345-75108028 protein_coding
  ENST00000568351 ZNRF1-010 75104784-75108590 protein_coding
  ENST00000568494 ZNRF1-005 75104798-75108004 retained_intron
  ENST00000568511 ZNRF1-009 75002297-75104889 protein_coding
  ENST00000568844 ZNRF1-006 75105383-75110713 retained_intron
  ENST00000579084 ZNRF1-012 75095144-75105336 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000320619ENST00000335325ENST00000566250ENST00000567962ENST00000568351
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000320619 N/A N/A N/A N/A N/A N/A N/A 4.356±2.90 9.743±0.00 6.635±0.10 N/A
ENST00000335325 N/A N/A 0.800±0.00 N/A N/A 1.047±0.00 N/A N/A N/A N/A N/A
ENST00000566250 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.637±0.00 43.015±0.00
ENST00000567962 16.387±0.00 18.172±0.00 4.604±0.00 13.703±0.00 N/A N/A 30.288±0.00 23.225±0.00 N/A N/A 27.920±0.00
ENST00000568351 8.827±0.00 12.344±0.00 15.772±0.00 7.277±0.00 13.398±0.00 N/A 14.213±0.00 12.697±0.00 N/A N/A 16.569±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002PJ CIL_0002PJ_0001 CGP 16:74712955-75000173
CIL_0002PH CIL_0002PH_0001 CGP 16:74871367-75110994
CIL_0004Y8 CIL_0004Y8_0002 CGP 16:74999030-75116771

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005764 IEA lysosome
GO:0005768 IDA endosome
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016874 IEA ligase activity
GO:0030054 IEA cell junction
GO:0031410 IEA cytoplasmic vesicle
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045202 IEA synapse
GO:0046872 IEA metal ion binding
GO:0070936 ISS protein K48-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020475 znrf1 zinc and ring finger 1 protein_coding Danio_rerio
ENSMUSG00000033545 Znrf1 zinc and ring finger 1 protein_coding Mus_musculus

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