C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328300 COL4A5-006 ENSG00000188153 9606 + X:108439882-108697541 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyLiverLungOvaryPlacentaTestisENST00000328300
Transcript ID Adrenal Brain Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000328300 1.825±0.00 0.356±0.00 0.478±0.00 5.829±0.00 4.986±0.00 1.890±0.81 2.148±1.40 2.257±0.45 1.951±1.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000172 CIL_000172_0002 CGP X:108155607-108697545

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005587 IEA collagen type IV trimer
GO:0005604 IEA basement membrane
GO:0005605 IEA basal lamina
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0007528 IEA neuromuscular junction development
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031594 IEA neuromuscular junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112931 Col4a5-001 protein_coding Mus_musculus 0 6865
ENSMUST00000112930 Col4a5-002 protein_coding Mus_musculus 0 6859
ENSMUST00000130732 Col4a5-003 protein_coding Mus_musculus 0 3230
ENSMUST00000128669 Col4a5-004 processed_transcript Mus_musculus 0 712

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