C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: male-specific lethal 1 homolog (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188895 MSL1 9606 + 17:40122298-40136916 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339569 MSL1-006 40131001-40136787 retained_intron
  ENST00000398532 MSL1-003 40122298-40136916 protein_coding
  ENST00000577454 MSL1-004 40122573-40130293 protein_coding
  ENST00000578648 MSL1-005 40122584-40134810 protein_coding
  ENST00000578826 MSL1-009 40123097-40126860 retained_intron
  ENST00000579565 MSL1-002 40122614-40134450 protein_coding
  ENST00000580086 MSL1-007 40131991-40136118 retained_intron
  ENST00000581246 MSL1-012 40130930-40133095 retained_intron
  ENST00000582884 MSL1-011 40126393-40132042 nonsense_mediated_decay
  ENST00000582920 MSL1-010 40124577-40129260 protein_coding
  ENST00000583127 MSL1-013 40131780-40133886 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339569ENST00000398532ENST00000577454ENST00000578648ENST00000578826ENST00000579565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339569 3.439±0.00 2.532±0.00 1.083±0.00 3.385±0.00 1.422±0.00 N/A N/A N/A N/A 2.467±0.00 N/A 2.800±0.01 N/A N/A
ENST00000398532 5.135±0.00 2.541±0.00 N/A 8.314±0.00 4.417±1.76 7.657±5.79 2.426±1.39 3.735±1.41 2.591±0.00 8.521±7.08 5.137±4.10 8.515±4.99 5.406±0.93 19.077±1.67
ENST00000577454 11.526±0.00 16.375±0.00 1.006±0.00 9.993±5.02 7.097±5.08 6.457±2.92 5.082±4.33 7.471±6.46 4.578±3.38 9.491±6.69 5.335±3.36 20.642±4.16 15.798±1.61 22.479±7.42
ENST00000578648 N/A N/A 1.413±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.631±0.00 17.621±0.00 33.451±0.00
ENST00000579565 N/A N/A 1.281±0.00 5.542±0.00 N/A 2.677±0.00 1.054±0.00 1.810±0.00 2.267±0.00 1.702±0.00 N/A 2.913±0.00 N/A 20.815±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002GG CIL_0002GG_0001 CGP 17:40092787-40136916
CIL_0007GO CIL_0007GO_0001 CGP 17:40122298-40172183

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0043984 IDA histone H4-K16 acetylation
GO:0072487 IDA MSL complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074734 MSL1 (1 of 2) male-specific lethal 1 homolog (Drosophila) protein_coding Danio_rerio
ENSDARG00000090223 MSL1 (2 of 2) male-specific lethal 1 homolog (Drosophila) protein_coding Danio_rerio
ENSMUSG00000052915 Msl1 male-specific lethal 1 homolog (Drosophila) protein_coding Mus_musculus

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