C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: male-specific lethal 1 homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398532 MSL1-003 ENSG00000188895 9606 + 17:40122298-40136916 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398532
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398532 5.135±0.00 2.541±0.00 8.314±0.00 4.417±1.76 7.657±5.79 2.426±1.39 3.735±1.41 2.591±0.00 8.521±7.08 5.137±4.10 8.515±4.99 5.406±0.93 19.077±1.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002GG CIL_0002GG_0001 CGP 17:40092787-40136916
CIL_0007GO CIL_0007GO_0001 CGP 17:40122298-40172183

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0043984 IDA histone H4-K16 acetylation
GO:0072487 IDA MSL complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037915 Msl1-001 protein_coding Mus_musculus 0 3502
ENSMUST00000107485 Msl1-004 protein_coding Mus_musculus 0 2217
ENSMUST00000107487 Msl1-002 protein_coding Mus_musculus 0 2200
ENSMUST00000037930 Msl1-003 protein_coding Mus_musculus 0 977
ENSMUST00000126969 Msl1-005 protein_coding Mus_musculus 0 667
ENSMUST00000141016 Msl1-006 processed_transcript Mus_musculus 0 593

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