C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: apolipoprotein D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000189058 APOD 9606 - 3:195568702-195584205 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343267 APOD-001 195568702-195584205 protein_coding
  ENST00000421243 APOD-005 195568908-195583940 protein_coding
  ENST00000453131 APOD-004 195569022-195583940 protein_coding
  ENST00000458447 APOD-003 195568753-195583954 nonsense_mediated_decay
  ENST00000463719 APOD-002 195570591-195584033 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343267ENST00000421243ENST00000453131ENST00000458447
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343267 742.165±0.00 74.185±0.00 0.947±0.00 184.015±147.57 102.858±28.38 129.463±126.95 33.918±25.36 6.143±4.85 9.542±9.41 33.353±28.52 77.383±55.65 22.799±17.69 48.782±28.43 67.584±61.77
ENST00000421243 N/A N/A 4.220±0.00 60.163±0.00 47.218±0.00 2.032±0.00 32.317±19.35 3.618±0.00 0.566±0.00 15.832±0.00 145.985±130.56 23.199±4.59 124.351±31.73 31.028±0.00
ENST00000453131 N/A N/A N/A N/A 28.279±0.00 68.792±66.18 50.117±0.00 4.631±0.00 16.025±0.00 33.855±0.00 171.075±142.21 5.784±0.00 N/A N/A
ENST00000458447 1292.930±0.00 110.217±0.00 N/A 183.655±0.00 148.110±0.00 357.876±0.00 75.031±0.00 5.588±0.00 0.469±0.00 66.432±0.00 498.885±0.00 17.022±0.00 129.789±24.04 124.713±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CD CIL_0006CD_0001 CGP 3:195514425-195584205

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000302 IDA response to reactive oxygen species
GO:0001525 NAS angiogenesis
GO:0005215 IEA transporter activity
GO:0005319 NAS lipid transporter activity
GO:0005515 IPI protein binding
GO:0005576 NAS extracellular region
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005783 ISS endoplasmic reticulum
GO:0006006 IDA glucose metabolic process
GO:0006629 IDA lipid metabolic process
GO:0006810 IEA transport
GO:0006869 NAS lipid transport
GO:0007420 ISS brain development
GO:0007568 NAS aging
GO:0008289 IEA lipid binding
GO:0010642 IDA negative regulation of platelet-derived growth factor receptor signaling pathway
GO:0014012 ISS peripheral nervous system axon regeneration
GO:0015485 IDA cholesterol binding
GO:0022626 ISS cytosolic ribosome
GO:0030425 ISS dendrite
GO:0030682 IEA evasion or tolerance of host defense response
GO:0036094 IEA small molecule binding
GO:0042246 ISS tissue regeneration
GO:0042308 IDA negative regulation of protein import into nucleus
GO:0042493 ISS response to drug
GO:0043025 ISS neuronal cell body
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048662 IDA negative regulation of smooth muscle cell proliferation
GO:0048678 ISS response to axon injury
GO:0051895 IMP negative regulation of focal adhesion assembly
GO:0060588 IDA negative regulation of lipoprotein lipid oxidation
GO:0070062 IDA extracellular vesicular exosome
GO:0071638 IDA negative regulation of monocyte chemotactic protein-1 production
GO:1900016 IDA negative regulation of cytokine production involved in inflammatory response
GO:2000098 IMP negative regulation of smooth muscle cell-matrix adhesion
GO:2000405 IDA negative regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057437 APOD (1 of 3) apolipoprotein D protein_coding Danio_rerio
ENSDARG00000060345 apod apolipoprotein D protein_coding Danio_rerio
ENSDARG00000060350 APOD (3 of 3) apolipoprotein D protein_coding Danio_rerio
ENSMUSG00000022548 Apod apolipoprotein D protein_coding Mus_musculus

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