C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apolipoprotein D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343267 APOD-001 ENSG00000189058 9606 - 3:195568702-195584205 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343267 742.165±0.00 74.185±0.00 0.947±0.00 184.015±147.57 102.858±28.38 129.463±126.95 33.918±25.36 6.143±4.85 9.542±9.41 33.353±28.52 77.383±55.65 22.799±17.69 48.782±28.43 67.584±61.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CD CIL_0006CD_0001 CGP 3:195514425-195584205

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000302 IDA response to reactive oxygen species
GO:0001525 NAS angiogenesis
GO:0005215 IEA transporter activity
GO:0005319 NAS lipid transporter activity
GO:0005515 IPI protein binding
GO:0005576 NAS extracellular region
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005783 ISS endoplasmic reticulum
GO:0006006 IDA glucose metabolic process
GO:0006629 IDA lipid metabolic process
GO:0006810 IEA transport
GO:0006869 NAS lipid transport
GO:0007420 ISS brain development
GO:0007568 NAS aging
GO:0008289 IEA lipid binding
GO:0010642 IDA negative regulation of platelet-derived growth factor receptor signaling pathway
GO:0014012 ISS peripheral nervous system axon regeneration
GO:0015485 IDA cholesterol binding
GO:0022626 ISS cytosolic ribosome
GO:0030425 ISS dendrite
GO:0030682 IEA evasion or tolerance of host defense response
GO:0042246 ISS tissue regeneration
GO:0042308 IDA negative regulation of protein import into nucleus
GO:0042493 ISS response to drug
GO:0043025 ISS neuronal cell body
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048662 IDA negative regulation of smooth muscle cell proliferation
GO:0048678 ISS response to axon injury
GO:0051895 IMP negative regulation of focal adhesion assembly
GO:0060588 IDA negative regulation of lipoprotein lipid oxidation
GO:0070062 IDA extracellular vesicular exosome
GO:0071638 IDA negative regulation of monocyte chemotactic protein-1 production
GO:1900016 IDA negative regulation of cytokine production involved in inflammatory response
GO:2000098 IMP negative regulation of smooth muscle cell-matrix adhesion
GO:2000405 IDA negative regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023207 Apod-003 retained_intron Mus_musculus 0 420
ENSMUST00000115230 Apod-002 protein_coding Mus_musculus 0 420
ENSMUST00000130560 Apod-001 protein_coding Mus_musculus 0 420
ENSMUST00000155682 Apod-005 retained_intron Mus_musculus 0 257

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