C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184203-ENSG00000189058 CGP 9606 3:195514425-195584205
GeneTranscriptPositionBiotype
ENSG00000189058 (APOD)
apolipoprotein D 		ENST00000343267 (APOD-001) 195568702-195584205 protein_coding
ENST00000421243 (APOD-005) 195568908-195583940 protein_coding
ENST00000453131 (APOD-004) 195569022-195583940 protein_coding
ENST00000458447 (APOD-003) 195568753-195583954 nonsense_mediated_decay
ENST00000463719 (APOD-002) 195570591-195584033 retained_intron
ENSG00000223711 (AC091633.3)
 ENST00000415451 (AC091633.3-003) 195546601-195547467 antisense
ENST00000417011 (AC091633.3-002) 195546404-195550581 antisense
ENST00000426109 (AC091633.3-001) 195544048-195546661 antisense
ENSG00000236425 (AC090018.1)
 ENST00000420238 (AC090018.1-001) 195561215-195561580 processed_pseudogene
ENSG00000236844 (AC091633.2)
 ENST00000454858 (AC091633.2-001) 195554610-195555083 processed_pseudogene
ENSG00000252620 (RNU6ATAC24P)
RNA, U6atac small nuclear 24, pseudogene 		ENST00000516811 (RNU6ATAC24P-201) 195523087-195523221 snRNA
ENSG00000265882 (RN7SL73P)
RNA, 7SL, cytoplasmic 73, pseudogene 		ENST00000585239 (RN7SL73P-201) 195553792-195554043 misc_RNA
CIL_0006CD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047714-ENSMUSG00000022548 CGP 10090 16:31251537-31314808
GeneTranscriptPositionBiotype
ENSMUSG00000022548 (Apod)
apolipoprotein D 		ENSMUST00000023207 (Apod-003) 31297156-31314594 retained_intron
ENSMUST00000115230 (Apod-002) 31297122-31314804 protein_coding
ENSMUST00000130560 (Apod-001) 31296192-31314808 protein_coding
ENSMUST00000145837 (Apod-004) 31303505-31311348 retained_intron
ENSMUST00000155682 (Apod-005) 31297513-31303678 retained_intron
ENSMUST00000156456 (Apod-006) 31297420-31303445 retained_intron
ENSMUSG00000047714 (Ppp1r2)
protein phosphatase 1, regulatory (inhibitor) subunit 2 		ENSMUST00000060188 (Ppp1r2-001) 31251537-31275277 protein_coding
ENSMUST00000115233 (Ppp1r2-002) 31257975-31274992 protein_coding
ENSMUSG00000098403 (Gm27415)
predicted gene, 27415 		ENSMUST00000183720 (Gm27415-201) 31261505-31261599 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CD_0001ENSG00000189058ENST00000343267ENST00000421243ENST00000453131ENST00000458447ENST00000463719ENSG00000223711ENST00000415451ENST00000417011ENST00000426109ENSG00000236425ENST00000420238ENSG00000236844ENST00000454858ENSG00000252620ENST00000516811ENSG00000265882ENST00000585239CIL_0006CD_0002ENSMUSG00000022548ENSMUST00000023207ENSMUST00000115230ENSMUST00000130560ENSMUST00000145837ENSMUST00000155682ENSMUST00000156456ENSMUSG00000047714ENSMUST00000060188ENSMUST00000115233ENSMUSG00000098403ENSMUST00000183720
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CD_0001ENSG00000189058ENST00000343267ENST00000421243ENST00000453131ENST00000458447ENSG00000223711ENST00000415451ENST00000417011ENST00000426109ENSG00000236425ENST00000420238ENSG00000236844ENST00000454858ENSG00000252620ENST00000516811ENSG00000265882ENST00000585239CIL_0006CD_0002ENSMUSG00000022548ENSMUST00000023207ENSMUST00000115230ENSMUST00000130560ENSMUST00000145837ENSMUST00000155682ENSMUSG00000047714ENSMUST00000060188ENSMUST00000115233ENSMUSG00000098403ENSMUST00000183720
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000189058 ENST00000343267 742.165±0.00 74.185±0.00 0.947±0.00 184.015±147.57 102.858±28.38 129.463±126.95 33.918±25.36 6.143±4.85 9.542±9.41 33.353±28.52 77.383±55.65 22.799±17.69 48.782±28.43 67.584±61.77
ENST00000421243 N/A N/A 4.220±0.00 60.163±0.00 47.218±0.00 2.032±0.00 32.317±19.35 3.618±0.00 0.566±0.00 15.832±0.00 145.985±130.56 23.199±4.59 124.351±31.73 31.028±0.00
ENST00000453131 N/A N/A N/A N/A 28.279±0.00 68.792±66.18 50.117±0.00 4.631±0.00 16.025±0.00 33.855±0.00 171.075±142.21 5.784±0.00 N/A N/A
ENST00000458447 1292.930±0.00 110.217±0.00 N/A 183.655±0.00 148.110±0.00 357.876±0.00 75.031±0.00 5.588±0.00 0.469±0.00 66.432±0.00 498.885±0.00 17.022±0.00 129.789±24.04 124.713±0.00
ENST00000463719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223711 ENST00000415451 0.029±0.00 0.477±0.00 N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A 0.201±0.00 0.132±0.00 0.129±0.01 N/A
ENST00000417011 N/A 0.143±0.00 N/A 0.031±0.00 N/A N/A 0.050±0.00 N/A N/A N/A N/A 0.084±0.00 0.045±0.00 0.609±0.00
ENST00000426109 N/A N/A N/A N/A N/A N/A N/A 2.494±0.00 N/A N/A N/A 0.145±0.00 N/A 2.351±1.80
ENSG00000236425 ENST00000420238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.06
ENSG00000236844 ENST00000454858 0.036±0.00 0.770±0.00 N/A 0.244±0.00 N/A 0.110±0.00 0.143±0.00 0.120±0.00 0.142±0.00 0.154±0.00 0.343±0.00 0.182±0.11 N/A 0.639±0.26
ENSG00000252620 ENST00000516811 N/A 4.762±0.00 N/A 0.565±0.00 N/A N/A 0.480±0.00 0.688±0.00 N/A N/A N/A 19.348±0.00 N/A 0.312±0.00
ENSG00000265882 ENST00000585239 N/A 1.204±0.00 0.762±0.00 0.466±0.00 0.685±0.00 0.312±0.00 0.078±0.00 0.420±0.00 0.071±0.00 0.078±0.00 0.144±0.00 0.563±0.32 0.225±0.00 0.840±0.14
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022548 ENSMUST00000023207 1.111±0.56 0.226±0.00 9.693±2.44 15.519±16.63 6.862±2.19 0.683±0.41 0.627±0.21 0.403±0.22 0.055±0.04 1.349±0.42 11.692±2.10 0.751±0.56 0.690±1.10 0.299±0.17
ENSMUST00000115230 0.926±0.22 0.342±0.15 7.939±0.70 4.589±0.94 4.884±0.84 0.603±0.52 0.894±0.31 0.385±0.10 0.073±0.03 0.544±0.17 8.251±1.45 0.536±0.55 0.564±0.46 0.090±0.00
ENSMUST00000130560 1.054±0.24 0.507±0.25 3.190±0.04 2.296±0.01 7.071±0.93 0.349±0.19 0.693±0.09 0.253±0.15 0.015±0.00 0.892±0.17 2.522±0.47 0.346±0.14 0.042±0.00 0.250±0.27
ENSMUST00000145837 N/A N/A N/A N/A N/A 0.411±0.00 N/A N/A N/A N/A N/A 0.343±0.00 N/A 0.248±0.00
ENSMUST00000155682 N/A N/A N/A 46.888±0.00 N/A 0.392±0.07 N/A 0.419±0.00 0.037±0.02 N/A N/A 1.197±0.29 1.674±0.00 0.316±0.05
ENSMUST00000156456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047714 ENSMUST00000060188 22.165±7.23 128.919±13.02 10.437±4.19 4.339±1.90 39.281±27.38 70.203±7.64 16.301±3.99 21.375±10.68 8.216±5.53 88.864±45.40 16.000±8.58 56.034±32.83 6.185±3.94 10.854±8.50
ENSMUST00000115233 N/A N/A N/A 28.044±0.00 N/A N/A N/A N/A 6.127±1.30 N/A N/A 35.068±0.00 23.609±14.31 37.050±31.20
ENSMUSG00000098403 ENSMUST00000183720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.188±0.00 N/A

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