C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ and LIM domain 7 (enigma)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196923 PDLIM7 9606 - 5:177483394-177497606 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355572 PDLIM7-004 177490246-177497573 protein_coding
  ENST00000355841 PDLIM7-001 177483396-177497583 protein_coding
  ENST00000359895 PDLIM7-003 177483394-177497561 protein_coding
  ENST00000393546 PDLIM7-012 177491010-177497601 protein_coding
  ENST00000393551 PDLIM7-007 177487897-177497583 protein_coding
  ENST00000463411 PDLIM7-008 177491759-177497606 retained_intron
  ENST00000486828 PDLIM7-006 177483398-177497601 nonsense_mediated_decay
  ENST00000493815 PDLIM7-002 177483394-177497561 nonsense_mediated_decay
  ENST00000503346 PDLIM7-011 177491073-177492970 retained_intron
  ENST00000503827 PDLIM7-013 177491096-177496427 nonsense_mediated_decay
  ENST00000504318 PDLIM7-014 177491072-177492572 retained_intron
  ENST00000504380 PDLIM7-017 177483695-177484473 retained_intron
  ENST00000505074 PDLIM7-015 177489811-177497586 protein_coding
  ENST00000505746 PDLIM7-016 177483875-177485014 processed_transcript
  ENST00000506161 PDLIM7-009 177491025-177496831 protein_coding
  ENST00000506537 PDLIM7-010 177492413-177496877 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355572ENST00000355841ENST00000359895ENST00000393546ENST00000486828ENST00000493815ENST00000504380ENST00000505074ENST00000506161
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355572 N/A N/A 0.611±0.00 8.403±0.00 N/A N/A 3.140±2.77 N/A 0.812±0.00 N/A 19.136±7.35 14.001±0.00 N/A 10.887±0.00
ENST00000355841 24.434±0.00 51.949±0.00 0.515±0.00 N/A 23.622±0.00 83.821±0.00 2.320±0.00 8.912±8.59 2.183±0.00 23.023±0.00 N/A 60.342±47.57 39.444±19.89 46.489±41.74
ENST00000359895 N/A 29.986±0.00 N/A 3.068±0.00 3.746±2.26 18.341±14.95 2.506±0.00 N/A 9.594±0.00 N/A N/A 43.107±0.00 10.537±0.00 N/A
ENST00000393546 N/A N/A 1.157±0.00 N/A 5.979±0.00 8.116±0.00 1.168±0.00 N/A N/A 2.914±0.00 29.734±0.00 N/A 24.459±0.00 N/A
ENST00000486828 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.322±0.00 N/A 0.445±0.00 N/A N/A
ENST00000493815 N/A N/A N/A N/A N/A N/A N/A N/A 0.437±0.00 9.670±0.00 6.826±0.00 N/A N/A N/A
ENST00000504380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.866±5.27 N/A 8.520±0.00
ENST00000505074 N/A N/A N/A N/A N/A N/A 0.249±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000506161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.372±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0002YE CIL_0002YE_0001 CGP 5:177456608-177497606
CIL_0002YF CIL_0002YF_0001 CGP 5:177483394-177511274

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0001725 IEA stress fiber
GO:0001726 IEA ruffle
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IDA focal adhesion
GO:0006898 TAS receptor-mediated endocytosis
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0015629 IDA actin cytoskeleton
GO:0030036 IEA actin cytoskeleton organization
GO:0030154 IEA cell differentiation
GO:0045669 IEA positive regulation of osteoblast differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030638 pdlim7 PDZ and LIM domain 7 protein_coding Danio_rerio
ENSMUSG00000021493 Pdlim7 PDZ and LIM domain 7 protein_coding Mus_musculus

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