C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ and LIM domain 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021493 Pdlim7 10090 - 13:55495795-55513676 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046246 Pdlim7-001 55498416-55513446 protein_coding
  ENSMUST00000069929 Pdlim7-003 55506774-55513434 protein_coding
  ENSMUST00000069968 Pdlim7-002 55506773-55513438 protein_coding
  ENSMUST00000128910 Pdlim7-005 55498412-55513437 retained_intron
  ENSMUST00000128911 Pdlim7-011 55507552-55509020 retained_intron
  ENSMUST00000131306 Pdlim7-007 55506774-55513438 protein_coding
  ENSMUST00000136583 Pdlim7-010 55508810-55513421 retained_intron
  ENSMUST00000144288 Pdlim7-008 55508233-55513676 protein_coding
  ENSMUST00000153230 Pdlim7-006 55497490-55513434 retained_intron
  ENSMUST00000153426 Pdlim7-009 55508966-55512709 protein_coding
  ENSMUST00000155098 Pdlim7-004 55495795-55513438 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046246ENSMUST00000069929ENSMUST00000069968ENSMUST00000128910ENSMUST00000131306ENSMUST00000136583ENSMUST00000153230
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046246 34.361±14.89 7.963±1.41 90.829±0.87 5.032±0.19 16.398±4.18 46.679±5.84 5.427±0.18 5.295±0.75 4.792±3.38 15.117±1.33 N/A 38.855±17.43 35.716±15.72 1.443±0.47
ENSMUST00000069929 N/A N/A 64.245±9.55 11.932±0.00 78.216±50.11 N/A 28.773±6.73 N/A N/A N/A 274.800±9.95 N/A N/A 1.628±0.26
ENSMUST00000069968 N/A 7.227±1.91 N/A 16.964±3.41 N/A N/A N/A N/A 2.245±1.97 N/A N/A N/A N/A N/A
ENSMUST00000128910 N/A N/A N/A N/A N/A N/A N/A N/A 0.678±0.00 6.464±0.00 N/A 5.638±0.00 N/A N/A
ENSMUST00000131306 N/A N/A N/A 7.843±3.65 4.440±0.00 N/A 3.086±0.30 N/A N/A N/A N/A 13.475±1.59 N/A 0.839±0.04
ENSMUST00000136583 N/A N/A N/A 49.198±0.00 N/A N/A N/A N/A N/A N/A N/A 31.189±0.00 30.027±0.00 N/A
ENSMUST00000153230 17.764±9.88 3.618±0.63 26.795±1.32 3.368±1.45 9.875±2.81 14.941±2.16 4.136±0.02 2.230±0.31 1.246±0.72 8.218±0.49 N/A 19.986±9.60 6.667±3.42 0.985±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0002YE CIL_0002YE_0002 CGP 13:55473429-55513676
CIL_0002YF CIL_0002YF_0002 CGP 13:55495795-55528538

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0001725 IDA stress fiber
GO:0001726 IDA ruffle
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005925 IEA focal adhesion
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0015629 IEA actin cytoskeleton
GO:0030036 IPI actin cytoskeleton organization
GO:0030154 IEA cell differentiation
GO:0045669 IEA positive regulation of osteoblast differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030638 pdlim7 PDZ and LIM domain 7 protein_coding Danio_rerio
ENSG00000196923 PDLIM7 PDZ and LIM domain 7 (enigma) protein_coding Homo_sapiens

Loading