C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 7 (enigma)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393546 PDLIM7-012 ENSG00000196923 9606 - 5:177491010-177497601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLungMusclePlacentaENST00000393546
Transcript ID Bladder Breast Colon Heart Lung Muscle Placenta
ENST00000393546 1.157±0.00 5.979±0.00 8.116±0.00 1.168±0.00 2.914±0.00 29.734±0.00 24.459±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0002YE CIL_0002YE_0001 CGP 5:177456608-177497606
CIL_0002YF CIL_0002YF_0001 CGP 5:177483394-177511274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131306 Pdlim7-007 protein_coding Mus_musculus 0 370
ENSMUST00000069968 Pdlim7-002 protein_coding Mus_musculus 0 370
ENSMUST00000046246 Pdlim7-001 protein_coding Mus_musculus 0 370
ENSMUST00000153230 Pdlim7-006 retained_intron Mus_musculus 0 370
ENSMUST00000155098 Pdlim7-004 nonsense_mediated_decay Mus_musculus 0 370
ENSMUST00000069929 Pdlim7-003 protein_coding Mus_musculus 0 364
ENSMUST00000128910 Pdlim7-005 retained_intron Mus_musculus 0 363
ENSMUST00000144288 Pdlim7-008 protein_coding Mus_musculus 0 346
ENSMUST00000136583 Pdlim7-010 retained_intron Mus_musculus 0 318
ENSMUST00000153426 Pdlim7-009 protein_coding Mus_musculus 0 198

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