C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selenoprotein T precursor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198843 SELT 9606 + 3:150602875-150630445 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000466234 SELT-006 150626911-150627990 retained_intron
  ENST00000471696 SELT-001 150603288-150630435 protein_coding
  ENST00000477889 SELT-003 150603291-150627693 protein_coding
  ENST00000480740 SELT-002 150602875-150627831 protein_coding
  ENST00000485923 SELT-005 150603336-150627905 protein_coding
  ENST00000492132 SELT-004 150603328-150627730 nonsense_mediated_decay
  ENST00000615547 SELT-201 150603279-150630445 protein_coding
  ENST00000619570 SELT-202 150603320-150627997 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000471696ENST00000615547ENST00000619570
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000471696 15.412±0.00 14.544±0.00 2.815±0.00 21.643±2.90 11.008±3.84 7.795±0.00 6.270±3.38 13.722±7.85 8.320±2.41 12.748±4.31 1.099±0.00 9.415±3.51 14.344±2.94 13.782±5.52
ENST00000615547 N/A N/A N/A N/A N/A 17.783±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619570 N/A N/A N/A N/A N/A N/A 6.599±0.00 N/A 13.882±0.00 N/A 5.210±0.00 14.807±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QY CIL_0002QY_0001 CGP 3:150408335-150603228
CIL_0004SR CIL_0004SR_0002 CGP 3:150541994-150603228
CIL_0002IA CIL_0002IA_0001 CGP 3:150546678-150630445
CIL_0002IB CIL_0002IB_0001 CGP 3:150602875-150703971

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0008430 IEA selenium binding
GO:0009749 IEA response to glucose
GO:0031016 IEA pancreas development
GO:0035773 IEA insulin secretion involved in cellular response to glucose stimulus
GO:0042593 IEA glucose homeostasis
GO:0045454 IEA cell redox homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027595 selt1b selenoprotein T, 1b protein_coding Danio_rerio
ENSDARG00000058354 selt1a selenoprotein T, 1a protein_coding Danio_rerio
ENSMUSG00000075700 Selt selenoprotein T protein_coding Mus_musculus

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