C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: selenoprotein T precursor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000471696 SELT-001 ENSG00000198843 9606 + 3:150603288-150630435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000471696
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000471696 15.412±0.00 14.544±0.00 2.815±0.00 21.643±2.90 11.008±3.84 7.795±0.00 6.270±3.38 13.722±7.85 8.320±2.41 12.748±4.31 1.099±0.00 9.415±3.51 14.344±2.94 13.782±5.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QY CIL_0002QY_0001 CGP 3:150408335-150603228
CIL_0004SR CIL_0004SR_0002 CGP 3:150541994-150603228
CIL_0002IA CIL_0002IA_0001 CGP 3:150546678-150630445
CIL_0002IB CIL_0002IB_0001 CGP 3:150602875-150703971

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0008430 IEA selenium binding
GO:0009749 IEA response to glucose
GO:0031016 IEA pancreas development
GO:0035773 IEA insulin secretion involved in cellular response to glucose stimulus
GO:0042593 IEA glucose homeostasis
GO:0045454 IEA cell redox homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107924 Selt-001 protein_coding Mus_musculus 0 1266
ENSMUST00000125815 Selt-002 retained_intron Mus_musculus 0 765
ENSMUST00000119098 Gm15359-001 processed_pseudogene Mus_musculus 0 730

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