C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000203867 RBM20 9606 + 10:110644397-110839469 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369519 RBM20-001 110644397-110839469 protein_coding
  ENST00000465774 RBM20-008 110835178-110836258 retained_intron
  ENST00000471172 RBM20-006 110823588-110831513 processed_transcript
  ENST00000480343 RBM20-007 110827771-110836234 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369519ENST00000465774
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369519 0.335±0.00 0.148±0.00 0.093±0.00 0.108±0.00 0.197±0.02 0.671±0.00 16.337±8.76 0.058±0.02 0.063±0.05 0.179±0.02 3.673±2.00 0.115±0.05 0.138±0.05 0.664±0.00
ENST00000465774 N/A N/A N/A N/A N/A N/A N/A N/A 0.400±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0001 VISTA 10:110384599-110985964
CIL_0006FC CIL_0006FC_0001 CGP 10:110567691-110839469
CIL_0000UM CIL_0000UM_0001 CGP 10:110644397-110900006

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 ISS RNA binding
GO:0005634 ISS:IEA nucleus
GO:0006397 IEA mRNA processing
GO:0007507 IMP heart development
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0033120 IMP positive regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000043639 Rbm20 RNA binding motif protein 20 protein_coding Mus_musculus

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