C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043639 Rbm20 10090 + 19:53677306-53867080 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000095969 Rbm20-001 53677306-53843763 protein_coding
  ENSMUST00000161856 Rbm20-002 53843210-53867080 nonsense_mediated_decay
  ENSMUST00000162910 Rbm20-003 53793308-53813573 processed_transcript
  ENSMUST00000164202 Rbm20-201 53677306-53867080 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095969ENSMUST00000161856ENSMUST00000162910ENSMUST00000164202
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095969 N/A 0.092±0.00 N/A N/A N/A N/A N/A 0.401±0.09 N/A 0.470±0.15 N/A 0.243±0.03 N/A 0.094±0.00
ENSMUST00000161856 0.163±0.00 0.372±0.13 N/A 0.597±0.00 N/A 1.369±0.00 N/A 0.300±0.00 0.287±0.08 N/A N/A 1.114±0.14 1.388±0.94 0.161±0.01
ENSMUST00000162910 N/A 0.652±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164202 0.293±0.22 0.063±0.00 0.381±0.03 0.222±0.03 0.432±0.00 0.140±0.02 25.545±1.44 0.249±0.02 0.061±0.02 0.416±0.21 8.246±3.22 0.231±0.06 0.519±0.34 0.101±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0002 VISTA 19:53415569-54017446
CIL_0006FC CIL_0006FC_0002 CGP 19:53600398-53867080
CIL_0000UM CIL_0000UM_0002 CGP 19:53677306-53929861

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0007507 ISS heart development
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0033120 IMP positive regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000203867 RBM20 RNA binding motif protein 20 protein_coding Homo_sapiens

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