C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369519 RBM20-001 ENSG00000203867 9606 + 10:110644397-110839469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369519
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369519 0.335±0.00 0.148±0.00 0.093±0.00 0.108±0.00 0.197±0.02 0.671±0.00 16.337±8.76 0.058±0.02 0.063±0.05 0.179±0.02 3.673±2.00 0.115±0.05 0.138±0.05 0.664±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0001 VISTA 10:110384599-110985964
CIL_0006FC CIL_0006FC_0001 CGP 10:110567691-110839469
CIL_0000UM CIL_0000UM_0001 CGP 10:110644397-110900006

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 ISS RNA binding
GO:0005634 ISS:IEA nucleus
GO:0006397 IEA mRNA processing
GO:0007507 IMP heart development
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0033120 IMP positive regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164202 Rbm20-201 protein_coding Mus_musculus 0 1709
ENSMUST00000095969 Rbm20-001 protein_coding Mus_musculus 0 1709
ENSMUST00000161856 Rbm20-002 nonsense_mediated_decay Mus_musculus 0 896
ENSMUST00000162910 Rbm20-003 processed_transcript Mus_musculus 0 285

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