C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RNA binding motif protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000465774 RBM20-008 ENSG00000203867 9606 + 10:110835178-110836258 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENST00000465774
Transcript ID Liver
ENST00000465774 0.400±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q9 CIL_0008Q9_0001 VISTA 10:110384599-110985964
CIL_0006FC CIL_0006FC_0001 CGP 10:110567691-110839469
CIL_0000UM CIL_0000UM_0001 CGP 10:110644397-110900006

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038014 Dnajc16-001 protein_coding Mus_musculus 0.00000000004 73
ENSMUST00000183937 Gm4707-013 protein_coding Mus_musculus 0.000000002 68
ENSMUST00000171561 Mms19-001 protein_coding Mus_musculus 0.000000007 66
ENSMUST00000167927 Mms19-006 nonsense_mediated_decay Mus_musculus 0.000000007 66
ENSMUST00000033498 Timm17b-001 protein_coding Mus_musculus 0.0000003 60
ENSMUST00000030501 Ebna1bp2-001 protein_coding Mus_musculus 0.000001 58

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