C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated factor 3 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000391993 TRAF3IP1-002 ENSG00000204104 9606 + 2:238320441-238400822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000391993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000391993 4.481±0.00 3.008±0.00 0.224±0.00 2.600±1.89 4.207±0.00 1.471±1.06 0.956±0.88 2.179±1.96 1.000±0.07 2.031±1.41 2.327±2.08 5.511±1.24 2.465±1.20 7.519±3.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NE CIL_0003NE_0001 CGP 2:238244038-238400900
CIL_0004UF CIL_0004UF_0002 CGP 2:238320441-238452250

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005813 IBA centrosome
GO:0005929 IBA cilium
GO:0008017 IEA microtubule binding
GO:0030992 IBA intraciliary transport particle B
GO:0042073 IBA intraciliary transport
GO:0042384 IBA cilium assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047242 Traf3ip1-001 protein_coding Mus_musculus 0 1373
ENSMUST00000189341 Traf3ip1-003 protein_coding Mus_musculus 0 811
ENSMUST00000187588 Traf3ip1-002 retained_intron Mus_musculus 0 809

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