C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XV, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204291 COL15A1 9606 + 9:98943179-99070792 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000375001 COL15A1-001 98943639-99070792 protein_coding
  ENST00000467052 COL15A1-002 98943179-98944188 processed_transcript
  ENST00000471477 COL15A1-004 98943639-98986453 retained_intron
  ENST00000496686 COL15A1-003 99038673-99041377 retained_intron
  ENST00000610452 COL15A1-201 98943713-99070792 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375001ENST00000610452
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375001 13.848±0.00 16.049±0.00 N/A 0.549±0.00 32.179±23.11 5.938±0.39 14.342±3.98 5.235±5.08 3.906±3.82 4.537±3.89 4.760±2.80 12.837±9.53 94.117±44.28 55.309±0.00
ENST00000610452 13.802±0.00 12.021±0.00 1.263±0.00 0.212±0.00 11.511±0.00 9.332±0.00 N/A 0.154±0.00 1.656±0.00 N/A 2.480±0.00 1.418±0.07 N/A 9.089±1.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000200 CIL_000200_0001 CGP 9:98807699-99070792
CIL_0007BK CIL_0007BK_0002 CGP 9:98943179-99154192

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005198 IEA structural molecule activity
GO:0005201 IC extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005582 TAS collagen type XV trimer
GO:0005604 IEA basement membrane
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IC:IEA cell adhesion
GO:0007165 NAS signal transduction
GO:0016021 NAS integral component of membrane
GO:0022617 TAS extracellular matrix disassembly
GO:0030154 IEA cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA:IEA extracellular matrix
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061848 col15a1b collagen, type XV, alpha 1b protein_coding Danio_rerio
ENSMUSG00000028339 Col15a1 collagen, type XV, alpha 1 protein_coding Mus_musculus

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