C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000200_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119514-ENSG00000204291 CGP 9606 9:98807699-99070792
GeneTranscriptPositionBiotype
ENSG00000119514 (GALNT12)
polypeptide N-acetylgalactosaminyltransferase 12
ENST00000375011 (GALNT12-001) 98807699-98850081 protein_coding
ENST00000470473 (GALNT12-002) 98848772-98849634 processed_transcript
ENST00000610463 (GALNT12-003) 98808003-98835355 nonsense_mediated_decay
ENST00000615204 (GALNT12-004) 98837075-98844522 retained_intron
ENSG00000204291 (COL15A1)
collagen, type XV, alpha 1
ENST00000375001 (COL15A1-001) 98943639-99070792 protein_coding
ENST00000467052 (COL15A1-002) 98943179-98944188 processed_transcript
ENST00000471477 (COL15A1-004) 98943639-98986453 retained_intron
ENST00000496686 (COL15A1-003) 99038673-99041377 retained_intron
ENST00000610452 (COL15A1-201) 98943713-99070792 protein_coding
ENSG00000229338 (RP11-92C4.4)
ENST00000449172 (RP11-92C4.4-001) 98890590-98891937 processed_pseudogene
CIL_000200_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039774-ENSMUSG00000028339 CGP 10090 4:47091909-47313167
GeneTranscriptPositionBiotype
ENSMUSG00000028339 (Col15a1)
collagen, type XV, alpha 1
ENSMUST00000082303 (Col15a1-002) 47208161-47313163 protein_coding
ENSMUST00000102917 (Col15a1-001) 47208161-47313167 protein_coding
ENSMUST00000107730 (Col15a1-008) 47303722-47313162 protein_coding
ENSMUST00000107731 (Col15a1-009) 47288069-47313167 protein_coding
ENSMUST00000124105 (Col15a1-003) 47233267-47245512 processed_transcript
ENSMUST00000140094 (Col15a1-005) 47258856-47262488 processed_transcript
ENSMUST00000140413 (Col15a1-006) 47288057-47293222 protein_coding
ENSMUST00000146967 (Col15a1-007) 47288287-47299258 protein_coding
ENSMUST00000148103 (Col15a1-004) 47258535-47262299 processed_transcript
ENSMUSG00000039774 (Galnt12)
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12
ENSMUST00000045041 (Galnt12-001) 47091909-47123070 protein_coding
ENSMUST00000107744 (Galnt12-002) 47091923-47123043 protein_coding
ENSMUSG00000094286 (Gm12424)
predicted gene 12424
ENSMUST00000179673 (Gm12424-001) 47101032-47101478 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000200_0001ENSG00000119514ENST00000375011ENST00000470473ENST00000610463ENST00000615204ENSG00000204291ENST00000375001ENST00000467052ENST00000471477ENST00000496686ENST00000610452ENSG00000229338ENST00000449172CIL_000200_0002ENSMUSG00000028339ENSMUST00000082303ENSMUST00000102917ENSMUST00000107730ENSMUST00000107731ENSMUST00000124105ENSMUST00000140094ENSMUST00000140413ENSMUST00000146967ENSMUST00000148103ENSMUSG00000039774ENSMUST00000045041ENSMUST00000107744ENSMUSG00000094286ENSMUST00000179673
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000200_0001ENSG00000119514ENST00000375011ENST00000610463ENST00000615204ENSG00000204291ENST00000375001ENST00000610452ENSG00000229338ENST00000449172CIL_000200_0002ENSMUSG00000028339ENSMUST00000082303ENSMUST00000102917ENSMUST00000107730ENSMUST00000107731ENSMUSG00000039774ENSMUST00000045041ENSMUST00000107744ENSMUSG00000094286ENSMUST00000179673
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119514 ENST00000375011 0.910±0.00 0.653±0.00 0.157±0.00 0.398±0.09 0.697±0.22 6.141±2.32 0.065±0.00 0.652±0.61 0.761±0.75 1.646±0.25 0.028±0.00 1.211±0.70 0.799±0.16 1.409±0.10
ENST00000470473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610463 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.995±0.00 N/A N/A N/A N/A
ENST00000615204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A
ENSG00000204291 ENST00000375001 13.848±0.00 16.049±0.00 N/A 0.549±0.00 32.179±23.11 5.938±0.39 14.342±3.98 5.235±5.08 3.906±3.82 4.537±3.89 4.760±2.80 12.837±9.53 94.117±44.28 55.309±0.00
ENST00000467052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610452 13.802±0.00 12.021±0.00 1.263±0.00 0.212±0.00 11.511±0.00 9.332±0.00 N/A 0.154±0.00 1.656±0.00 N/A 2.480±0.00 1.418±0.07 N/A 9.089±1.94
ENSG00000229338 ENST00000449172 N/A 0.118±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.162±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028339 ENSMUST00000082303 N/A 11.422±2.01 N/A N/A 16.766±10.02 3.281±0.00 N/A N/A N/A 1.792±0.00 N/A 14.235±3.84 N/A 0.425±0.00
ENSMUST00000102917 101.182±30.67 6.706±1.66 27.524±1.15 1.640±0.20 36.638±11.98 15.057±1.79 18.236±1.20 8.954±1.34 0.170±0.07 6.189±1.76 3.783±1.31 35.541±9.58 4.918±4.80 1.225±0.22
ENSMUST00000107730 84.092±22.06 N/A 25.860±0.00 1.839±0.16 36.824±11.42 8.770±0.18 17.304±1.97 10.793±0.71 0.787±0.54 2.890±0.00 2.150±0.53 10.684±0.88 1.360±0.36 5.597±0.91
ENSMUST00000107731 N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A N/A 1.571±0.35
ENSMUST00000124105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039774 ENSMUST00000045041 2.345±2.06 1.189±0.35 1.298±0.05 0.403±0.10 2.904±1.02 61.707±6.82 0.350±0.06 1.739±0.12 0.206±0.09 1.703±0.79 0.281±0.23 4.996±2.63 1.305±0.48 1.084±0.49
ENSMUST00000107744 N/A N/A N/A 0.130±0.00 N/A N/A N/A N/A 0.098±0.07 N/A 0.050±0.03 N/A 0.431±0.00 0.479±0.00
ENSMUSG00000094286 ENSMUST00000179673 0.491±0.28 0.292±0.04 0.753±0.15 0.411±0.29 0.480±0.25 1.122±0.69 0.231±0.13 0.160±0.05 0.242±0.24 0.638±0.49 0.424±0.22 1.382±0.80 0.383±0.25 0.351±0.12

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