C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XV, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375001 COL15A1-001 ENSG00000204291 9606 + 9:98943639-99070792 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000375001
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000375001 13.848±0.00 16.049±0.00 0.549±0.00 32.179±23.11 5.938±0.39 14.342±3.98 5.235±5.08 3.906±3.82 4.537±3.89 4.760±2.80 12.837±9.53 94.117±44.28 55.309±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000200 CIL_000200_0001 CGP 9:98807699-99070792
CIL_0007BK CIL_0007BK_0002 CGP 9:98943179-99154192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005198 IEA structural molecule activity
GO:0005201 IC extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005582 TAS collagen type XV trimer
GO:0005604 IEA basement membrane
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IC:IEA cell adhesion
GO:0007165 NAS signal transduction
GO:0016021 NAS integral component of membrane
GO:0022617 TAS extracellular matrix disassembly
GO:0030154 IEA cell differentiation
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA:IEA extracellular matrix
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102917 Col15a1-001 protein_coding Mus_musculus 0 2279
ENSMUST00000082303 Col15a1-002 protein_coding Mus_musculus 0 1855
ENSMUST00000107731 Col15a1-009 protein_coding Mus_musculus 0 1618
ENSMUST00000146967 Col15a1-007 protein_coding Mus_musculus 0 521
ENSMUST00000140413 Col15a1-006 protein_coding Mus_musculus 0 281

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