C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XV, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610452 COL15A1-201 ENSG00000204291 9606 + 9:98943713-99070792 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverMuscleOvaryTestisENST00000610452
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Muscle Ovary Testis
ENST00000610452 13.802±0.00 12.021±0.00 1.263±0.00 0.212±0.00 11.511±0.00 9.332±0.00 0.154±0.00 1.656±0.00 2.480±0.00 1.418±0.07 9.089±1.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000200 CIL_000200_0001 CGP 9:98807699-99070792
CIL_0007BK CIL_0007BK_0002 CGP 9:98943179-99154192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0007155 IEA cell adhesion
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102917 Col15a1-001 protein_coding Mus_musculus 0 2279
ENSMUST00000082303 Col15a1-002 protein_coding Mus_musculus 0 1855
ENSMUST00000107731 Col15a1-009 protein_coding Mus_musculus 0 1618
ENSMUST00000146967 Col15a1-007 protein_coding Mus_musculus 0 521
ENSMUST00000140413 Col15a1-006 protein_coding Mus_musculus 0 281

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