C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XV, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028339 Col15a1 10090 + 4:47208161-47313167 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000082303 Col15a1-002 47208161-47313163 protein_coding
  ENSMUST00000102917 Col15a1-001 47208161-47313167 protein_coding
  ENSMUST00000107730 Col15a1-008 47303722-47313162 protein_coding
  ENSMUST00000107731 Col15a1-009 47288069-47313167 protein_coding
  ENSMUST00000124105 Col15a1-003 47233267-47245512 processed_transcript
  ENSMUST00000140094 Col15a1-005 47258856-47262488 processed_transcript
  ENSMUST00000140413 Col15a1-006 47288057-47293222 protein_coding
  ENSMUST00000146967 Col15a1-007 47288287-47299258 protein_coding
  ENSMUST00000148103 Col15a1-004 47258535-47262299 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082303ENSMUST00000102917ENSMUST00000107730ENSMUST00000107731
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082303 N/A 11.422±2.01 N/A N/A 16.766±10.02 3.281±0.00 N/A N/A N/A 1.792±0.00 N/A 14.235±3.84 N/A 0.425±0.00
ENSMUST00000102917 101.182±30.67 6.706±1.66 27.524±1.15 1.640±0.20 36.638±11.98 15.057±1.79 18.236±1.20 8.954±1.34 0.170±0.07 6.189±1.76 3.783±1.31 35.541±9.58 4.918±4.80 1.225±0.22
ENSMUST00000107730 84.092±22.06 N/A 25.860±0.00 1.839±0.16 36.824±11.42 8.770±0.18 17.304±1.97 10.793±0.71 0.787±0.54 2.890±0.00 2.150±0.53 10.684±0.88 1.360±0.36 5.597±0.91
ENSMUST00000107731 N/A N/A N/A N/A N/A N/A N/A N/A 0.129±0.00 N/A N/A N/A N/A 1.571±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000200 CIL_000200_0002 CGP 4:47091909-47313167
CIL_0007BK CIL_0007BK_0003 CGP 4:47208161-47414931

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005581 IEA collagen trimer
GO:0005604 IDA basement membrane
GO:0005615 IEA extracellular space
GO:0007155 IEA cell adhesion
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061848 col15a1b collagen, type XV, alpha 1b protein_coding Danio_rerio
ENSG00000204291 COL15A1 collagen, type XV, alpha 1 protein_coding Homo_sapiens

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