C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377617 ATXN2-001 ENSG00000204842 9606 - 12:111452214-111599676 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0001 VISTA 12:110911282-111513646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002091 IMP negative regulation of receptor internalization
GO:0003723 NAS RNA binding
GO:0005154 IPI epidermal growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005802 IDA trans-Golgi network
GO:0005844 IDA polysome
GO:0006417 NAS regulation of translation
GO:0008022 IPI protein C-terminus binding
GO:0008219 IEA cell death
GO:0010494 IDA cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0016070 NAS RNA metabolic process
GO:0021702 IEA cerebellar Purkinje cell differentiation
GO:0030529 IDA ribonucleoprotein complex
GO:0033962 IMP cytoplasmic mRNA processing body assembly
GO:0034063 IMP stress granule assembly
GO:0040015 IEA negative regulation of multicellular organism growth
GO:0044822 IDA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048812 IEA neuron projection morphogenesis
GO:0048872 IEA homeostasis of number of cells
GO:0050658 NAS RNA transport
GO:0050905 IEA neuromuscular process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051950 Atxn2-001 protein_coding Mus_musculus 0 5049
ENSMUST00000161064 Atxn2-002 protein_coding Mus_musculus 0 2841
ENSMUST00000162327 Atxn2-007 protein_coding Mus_musculus 0 976
ENSMUST00000159828 Atxn2-006 retained_intron Mus_musculus 0 776
ENSMUST00000160821 Atxn2-005 protein_coding Mus_musculus 0 771
ENSMUST00000161159 Atxn2-012 protein_coding Mus_musculus 0 660
ENSMUST00000160813 Atxn2-004 processed_transcript Mus_musculus 0 588
ENSMUST00000159928 Atxn2-013 retained_intron Mus_musculus 0 577
ENSMUST00000162995 Atxn2-011 protein_coding Mus_musculus 0 475
ENSMUST00000161872 Atxn2-008 retained_intron Mus_musculus 0 459
ENSMUST00000162611 Atxn2-003 processed_transcript Mus_musculus 0 412
ENSMUST00000161836 Atxn2-015 retained_intron Mus_musculus 0 374
ENSMUST00000161433 Atxn2-016 retained_intron Mus_musculus 0 350
ENSMUST00000160462 Atxn2-014 nonsense_mediated_decay Mus_musculus 0 315
ENSMUST00000160220 Atxn2-017 nonsense_mediated_decay Mus_musculus 9.94922e-44 183

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