C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ataxin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042605 Atxn2 10090 + 5:121711337-121816493 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051950 Atxn2-001 121711609-121814949 protein_coding
  ENSMUST00000159828 Atxn2-006 121785074-121795422 retained_intron
  ENSMUST00000159928 Atxn2-013 121805579-121814734 retained_intron
  ENSMUST00000160093 Atxn2-009 121801323-121802265 processed_transcript
  ENSMUST00000160220 Atxn2-017 121811460-121816493 nonsense_mediated_decay
  ENSMUST00000160462 Atxn2-014 121806245-121813455 nonsense_mediated_decay
  ENSMUST00000160813 Atxn2-004 121712969-121772787 processed_transcript
  ENSMUST00000160821 Atxn2-005 121777929-121795011 protein_coding
  ENSMUST00000161064 Atxn2-002 121749196-121814949 protein_coding
  ENSMUST00000161159 Atxn2-012 121803008-121814631 protein_coding
  ENSMUST00000161433 Atxn2-016 121810965-121811930 retained_intron
  ENSMUST00000161836 Atxn2-015 121810664-121811533 retained_intron
  ENSMUST00000161872 Atxn2-008 121797359-121803435 retained_intron
  ENSMUST00000162327 Atxn2-007 121795034-121811629 protein_coding
  ENSMUST00000162459 Atxn2-010 121801746-121810951 retained_intron
  ENSMUST00000162611 Atxn2-003 121711337-121749183 processed_transcript
  ENSMUST00000162995 Atxn2-011 121802230-121814475 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051950ENSMUST00000161064ENSMUST00000161159ENSMUST00000162327ENSMUST00000162995
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051950 5.624±0.52 8.195±0.92 5.040±0.54 9.141±0.24 4.212±0.33 7.438±1.26 4.643±1.31 6.219±1.25 4.171±0.86 5.420±0.62 3.740±0.88 9.452±2.60 4.004±0.07 15.523±6.45
ENSMUST00000161064 N/A 13.572±2.26 N/A 12.492±0.00 N/A N/A N/A N/A 4.226±0.00 N/A 4.231±0.71 10.673±1.80 7.596±4.26 6.471±0.00
ENSMUST00000161159 N/A N/A N/A 53.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 43.517±5.11 N/A
ENSMUST00000162327 14.292±1.17 30.647±5.70 N/A 47.921±0.00 10.628±2.15 18.411±4.07 13.010±2.31 14.861±1.67 14.165±3.78 16.386±1.34 N/A 32.868±7.28 7.297±0.36 25.757±0.00
ENSMUST00000162995 N/A 50.294±9.45 N/A N/A 19.052±1.01 34.853±7.92 19.716±3.09 18.632±1.95 14.564±0.13 N/A N/A 61.058±8.99 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002091 IEA negative regulation of receptor internalization
GO:0005154 IEA epidermal growth factor receptor binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0005844 IEA polysome
GO:0008022 IEA protein C-terminus binding
GO:0010494 IEA cytoplasmic stress granule
GO:0016020 IEA membrane
GO:0021702 IMP cerebellar Purkinje cell differentiation
GO:0030529 IEA ribonucleoprotein complex
GO:0033962 IEA cytoplasmic mRNA processing body assembly
GO:0034063 IEA stress granule assembly
GO:0040015 IMP negative regulation of multicellular organism growth
GO:0044822 IEA poly(A) RNA binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048812 IMP neuron projection morphogenesis
GO:0048872 IMP homeostasis of number of cells
GO:0050905 IMP neuromuscular process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052897 atxn2 ataxin 2 protein_coding Danio_rerio
ENSG00000204842 ATXN2 ataxin 2 protein_coding Homo_sapiens

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