C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000483311 ATXN2-005 ENSG00000204842 9606 - 12:111452296-111599276 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderHeartLiverLungMuscleENST00000483311
Transcript ID Bladder Heart Liver Lung Muscle
ENST00000483311 1.289±0.00 2.961±0.00 0.870±0.00 1.997±0.49 2.274±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0001 VISTA 12:110911282-111513646

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051950 Atxn2-001 protein_coding Mus_musculus 0 2918
ENSMUST00000161064 Atxn2-002 protein_coding Mus_musculus 0 2412
ENSMUST00000159828 Atxn2-006 retained_intron Mus_musculus 0 776
ENSMUST00000160821 Atxn2-005 protein_coding Mus_musculus 0 771
ENSMUST00000161159 Atxn2-012 protein_coding Mus_musculus 0 660
ENSMUST00000160813 Atxn2-004 processed_transcript Mus_musculus 0 588
ENSMUST00000159928 Atxn2-013 retained_intron Mus_musculus 0 577
ENSMUST00000162327 Atxn2-007 protein_coding Mus_musculus 0 520
ENSMUST00000162995 Atxn2-011 protein_coding Mus_musculus 0 475
ENSMUST00000162611 Atxn2-003 processed_transcript Mus_musculus 0 412
ENSMUST00000161836 Atxn2-015 retained_intron Mus_musculus 0 374
ENSMUST00000161433 Atxn2-016 retained_intron Mus_musculus 0 350
ENSMUST00000160462 Atxn2-014 nonsense_mediated_decay Mus_musculus 0 315
ENSMUST00000160220 Atxn2-017 nonsense_mediated_decay Mus_musculus 8.96831e-44 183

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