C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389154 ATXN2-004 ENSG00000204842 9606 - 12:111452214-111488612 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389154
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389154 3.621±0.00 4.524±0.00 6.665±0.00 4.549±0.00 3.780±0.00 2.461±0.00 4.421±0.00 2.444±0.00 4.800±0.00 2.763±1.94 4.262±0.00 2.358±0.00 12.539±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0001 VISTA 12:110911282-111513646

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051950 Atxn2-001 protein_coding Mus_musculus 0 1491
ENSMUST00000161064 Atxn2-002 protein_coding Mus_musculus 0 1297
ENSMUST00000159928 Atxn2-013 retained_intron Mus_musculus 0 1077
ENSMUST00000161159 Atxn2-012 protein_coding Mus_musculus 0 1009
ENSMUST00000162327 Atxn2-007 protein_coding Mus_musculus 0 878
ENSMUST00000162995 Atxn2-011 protein_coding Mus_musculus 0 684
ENSMUST00000161872 Atxn2-008 retained_intron Mus_musculus 0 431
ENSMUST00000161836 Atxn2-015 retained_intron Mus_musculus 0 374
ENSMUST00000161433 Atxn2-016 retained_intron Mus_musculus 0 348
ENSMUST00000160462 Atxn2-014 nonsense_mediated_decay Mus_musculus 0 252
ENSMUST00000160220 Atxn2-017 nonsense_mediated_decay Mus_musculus 9.80909e-45 185

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