C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542287 ATXN2-011 ENSG00000204842 9606 - 12:111452754-111599673 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastLiverMuscleENST00000542287
Transcript ID Adipose Brain Breast Liver Muscle
ENST00000542287 1.903±0.00 4.875±1.24 2.478±0.00 2.383±0.00 2.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0001 VISTA 12:110911282-111513646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051950 Atxn2-001 protein_coding Mus_musculus 0 3845
ENSMUST00000161064 Atxn2-002 protein_coding Mus_musculus 0 2841
ENSMUST00000162327 Atxn2-007 protein_coding Mus_musculus 0 976
ENSMUST00000159828 Atxn2-006 retained_intron Mus_musculus 0 776
ENSMUST00000160821 Atxn2-005 protein_coding Mus_musculus 0 771
ENSMUST00000161159 Atxn2-012 protein_coding Mus_musculus 0 662
ENSMUST00000160813 Atxn2-004 processed_transcript Mus_musculus 0 586
ENSMUST00000159928 Atxn2-013 retained_intron Mus_musculus 0 579
ENSMUST00000162611 Atxn2-003 processed_transcript Mus_musculus 0 494
ENSMUST00000162995 Atxn2-011 protein_coding Mus_musculus 0 477
ENSMUST00000161872 Atxn2-008 retained_intron Mus_musculus 0 459
ENSMUST00000161836 Atxn2-015 retained_intron Mus_musculus 0 374
ENSMUST00000161433 Atxn2-016 retained_intron Mus_musculus 0 348
ENSMUST00000160462 Atxn2-014 nonsense_mediated_decay Mus_musculus 0 252
ENSMUST00000160220 Atxn2-017 nonsense_mediated_decay Mus_musculus 1.96182e-44 185

Loading