C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 35, member F6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000213699 SLC35F6 9606 + 2:26764284-26781231 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344420 SLC35F6-001 26764288-26781231 protein_coding
  ENST00000414029 SLC35F6-003 26764325-26781147 nonsense_mediated_decay
  ENST00000429494 SLC35F6-002 26764284-26781140 nonsense_mediated_decay
  ENST00000482746 SLC35F6-004 26764290-26778219 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344420ENST00000414029ENST00000429494
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344420 11.831±0.00 9.363±0.00 1.682±0.00 3.251±1.62 3.585±1.06 2.359±1.11 2.811±1.81 8.143±0.00 6.130±0.00 2.717±1.00 2.891±0.00 5.115±3.63 6.232±3.27 3.178±2.35
ENST00000414029 N/A N/A N/A 2.729±0.00 N/A N/A N/A 4.844±2.62 4.031±0.00 1.232±0.00 3.302±2.75 2.119±0.42 4.309±0.00 N/A
ENST00000429494 21.709±0.00 6.453±0.00 N/A N/A 7.360±0.00 4.118±0.00 1.733±1.22 5.949±0.00 1.992±0.00 2.620±0.90 3.164±0.00 3.132±0.00 4.133±0.00 3.065±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WF CIL_0007WF_0001 VISTA 2:26419781-27023232
CIL_00004N CIL_00004N_0001 CGP 2:26692690-26781231
CIL_00004O CIL_00004O_0001 CGP 2:26764284-26801067

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005351 IEA sugar:proton symporter activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005764 IEA lysosome
GO:0005765 IDA lysosomal membrane
GO:0006810 IEA transport
GO:0008284 IMP positive regulation of cell proliferation
GO:0008643 IEA carbohydrate transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:1901029 IMP negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016745 slc35f6 solute carrier family 35, member F6 protein_coding Danio_rerio
ENSMUSG00000029175 Slc35f6 solute carrier family 35, member F6 protein_coding Mus_musculus

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