C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 35, member F6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344420 SLC35F6-001 ENSG00000213699 9606 + 2:26764288-26781231 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344420
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344420 11.831±0.00 9.363±0.00 1.682±0.00 3.251±1.62 3.585±1.06 2.359±1.11 2.811±1.81 8.143±0.00 6.130±0.00 2.717±1.00 2.891±0.00 5.115±3.63 6.232±3.27 3.178±2.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WF CIL_0007WF_0001 VISTA 2:26419781-27023232
CIL_00004N CIL_00004N_0001 CGP 2:26692690-26781231
CIL_00004O CIL_00004O_0001 CGP 2:26764284-26801067

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005351 IEA sugar:proton symporter activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005764 IEA lysosome
GO:0005765 IDA lysosomal membrane
GO:0006810 IEA transport
GO:0008284 IMP positive regulation of cell proliferation
GO:0008643 IEA carbohydrate transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome
GO:1901029 IMP negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062962 Slc35f6-001 protein_coding Mus_musculus 0 1186
ENSMUST00000143867 Slc35f6-002 nonsense_mediated_decay Mus_musculus 0 1002
ENSMUST00000124474 Slc35f6-003 nonsense_mediated_decay Mus_musculus 0 819
ENSMUST00000131978 Slc35f6-004 retained_intron Mus_musculus 0 370

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