C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 35, member F6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029175 Slc35f6 10090 + 5:30647933-30659731 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000062962 Slc35f6-001 30647933-30659731 protein_coding
  ENSMUST00000124474 Slc35f6-003 30648012-30658191 nonsense_mediated_decay
  ENSMUST00000131978 Slc35f6-004 30647976-30656100 retained_intron
  ENSMUST00000143867 Slc35f6-002 30647967-30658191 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062962ENSMUST00000124474ENSMUST00000143867
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062962 7.002±0.60 15.464±3.98 9.330±0.24 3.650±0.55 7.932±3.17 12.210±1.64 11.491±1.48 6.400±1.14 3.958±1.24 9.622±0.62 3.227±0.43 11.759±2.69 11.010±7.63 3.155±1.25
ENSMUST00000124474 7.303±2.20 8.431±0.55 N/A 2.816±0.12 8.754±3.81 8.780±2.12 8.706±1.90 5.939±0.54 2.075±0.50 10.123±2.53 1.816±0.13 11.625±0.00 9.940±0.94 2.844±0.00
ENSMUST00000143867 12.271±5.55 17.119±5.58 9.783±1.28 7.034±0.24 16.790±4.35 21.404±8.13 19.598±2.35 6.332±2.14 5.172±1.41 14.451±4.24 1.770±0.66 33.116±5.02 19.921±15.72 5.472±1.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WF CIL_0007WF_0002 VISTA 5:30314016-30916922
CIL_00004N CIL_00004N_0002 CGP 5:30588170-30659731
CIL_00004O CIL_00004O_0002 CGP 5:30647933-30674827

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005739 ISS mitochondrion
GO:0005764 IDA lysosome
GO:0005765 ISS lysosomal membrane
GO:0006810 IEA transport
GO:0008284 ISS positive regulation of cell proliferation
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome
GO:1901029 ISS negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016745 slc35f6 solute carrier family 35, member F6 protein_coding Danio_rerio
ENSG00000213699 SLC35F6 solute carrier family 35, member F6 protein_coding Homo_sapiens

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