C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribonuclease, RNase K
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000219200 RNASEK 9606 + 17:7012417-7014532 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000402093 RNASEK-201 7012417-7014531 protein_coding
  ENST00000546395 RNASEK-003 7012461-7014520 nonsense_mediated_decay
  ENST00000548577 RNASEK-001 7012417-7014532 protein_coding
  ENST00000549393 RNASEK-004 7012648-7014519 protein_coding
  ENST00000552039 RNASEK-007 7012632-7014532 protein_coding
  ENST00000552176 RNASEK-011 7012646-7014532 retained_intron
  ENST00000552321 RNASEK-005 7013231-7014520 nonsense_mediated_decay
  ENST00000552842 RNASEK-006 7012646-7014530 protein_coding
  ENST00000570898 RNASEK-008 7012622-7014330 protein_coding
  ENST00000575822 RNASEK-009 7012648-7013817 retained_intron
  ENST00000593646 RNASEK-012 7012611-7014482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000552039ENST00000593646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000552039 92.674±0.00 118.880±0.00 N/A 90.691±0.00 88.416±0.00 30.301±23.81 52.674±0.00 85.023±72.07 57.822±0.00 232.905±0.00 48.401±0.00 120.208±33.36 150.597±50.13 88.960±0.00
ENST00000593646 228.672±0.00 216.920±0.00 8.072±0.00 124.016±56.35 115.175±98.61 96.797±88.74 56.373±51.73 104.244±94.21 52.072±43.49 205.072±199.01 67.999±59.84 155.277±79.09 157.936±66.53 130.218±85.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0002 CGP 17:7012417-7017520

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004521 IDA endoribonuclease activity
GO:0005575 ND cellular_component
GO:0009303 IDA rRNA transcription
GO:0016021 IEA integral component of membrane
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069336 rnasekb ribonuclease, RNase K b protein_coding Danio_rerio
ENSMUSG00000040904 Gm21988 predicted gene 21988 protein_coding Mus_musculus
ENSMUSG00000093989 Rnasek ribonuclease, RNase K protein_coding Mus_musculus

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