C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonuclease, RNase K
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593646 RNASEK-012 ENSG00000219200 9606 + 17:7012611-7014482 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000593646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000593646 228.672±0.00 216.920±0.00 8.072±0.00 124.016±56.35 115.175±98.61 96.797±88.74 56.373±51.73 104.244±94.21 52.072±43.49 205.072±199.01 67.999±59.84 155.277±79.09 157.936±66.53 130.218±85.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0002 CGP 17:7012417-7017520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004521 IDA endoribonuclease activity
GO:0005575 ND cellular_component
GO:0009303 IDA rRNA transcription
GO:0016021 IEA integral component of membrane
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176268 Gm21988-002 nonsense_mediated_decay Mus_musculus 0 484
ENSMUST00000040428 Rnasek-001 protein_coding Mus_musculus 0 484
ENSMUST00000176116 Gm21988-001 nonsense_mediated_decay Mus_musculus 0 459
ENSMUST00000141880 Rnasek-003 protein_coding Mus_musculus 0 353
ENSMUST00000125752 Rnasek-002 nonsense_mediated_decay Mus_musculus 0 353

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