C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447927 EIF6-003 ENSG00000242372 9606 - 20:35278911-35284804 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyOvaryPlacentaTestisENST00000447927
Transcript ID Adrenal Colon Kidney Ovary Placenta Testis
ENST00000447927 28.705±0.00 10.995±0.00 24.604±0.00 56.561±0.00 35.101±9.59 11.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0002HV CIL_0002HV_0001 CGP 20:35226654-35284985
CIL_0002HS CIL_0002HS_0001 CGP 20:35278907-35292401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0042256 IEA mature ribosome assembly
GO:0043022 IEA ribosome binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129830 Eif6-007 nonsense_mediated_decay Mus_musculus 0 760
ENSMUST00000138962 Eif6-004 retained_intron Mus_musculus 0 638
ENSMUST00000029142 Eif6-001 protein_coding Mus_musculus 0 569
ENSMUST00000154841 Eif6-008 nonsense_mediated_decay Mus_musculus 0 542

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