C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000621148 EIF6-201 ENSG00000242372 9606 - 20:35278907-35284717 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000621148
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000621148 48.491±0.00 52.960±0.00 6.790±0.00 15.283±7.65 28.701±20.27 13.548±5.07 10.277±0.00 34.834±19.46 40.817±37.43 23.103±19.86 15.690±14.76 67.568±49.34 77.658±50.42 29.719±14.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0002HV CIL_0002HV_0001 CGP 20:35226654-35284985
CIL_0002HS CIL_0002HS_0001 CGP 20:35278907-35292401

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000054 IEA ribosomal subunit export from nucleus
GO:0003743 IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006413 IEA translational initiation
GO:0042256 IEA:IMP mature ribosome assembly
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0043022 IEA:IDA ribosome binding
GO:0043023 IEA ribosomal large subunit binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029142 Eif6-001 protein_coding Mus_musculus 0 1070
ENSMUST00000154841 Eif6-008 nonsense_mediated_decay Mus_musculus 0 542
ENSMUST00000129830 Eif6-007 nonsense_mediated_decay Mus_musculus 0 501
ENSMUST00000138962 Eif6-004 retained_intron Mus_musculus 0 501
ENSMUST00000134278 Eif6-005 protein_coding Mus_musculus 0 351

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