C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stereocilin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000242866 STRC 9606 - 15:43599398-43618800 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000428650 STRC-011 43599633-43618798 nonsense_mediated_decay
  ENST00000432436 STRC-005 43615127-43618240 protein_coding
  ENST00000440125 STRC-012 43599633-43618798 nonsense_mediated_decay
  ENST00000448437 STRC-003 43599602-43613187 retained_intron
  ENST00000450892 STRC-001 43599398-43618800 protein_coding
  ENST00000455136 STRC-006 43604704-43613235 nonsense_mediated_decay
  ENST00000460952 STRC-007 43600563-43601675 retained_intron
  ENST00000470279 STRC-009 43611199-43613020 retained_intron
  ENST00000471703 STRC-002 43599590-43613105 retained_intron
  ENST00000483250 STRC-008 43611194-43613025 retained_intron
  ENST00000485556 STRC-004 43599602-43613214 retained_intron
  ENST00000493750 STRC-010 43600999-43603582 retained_intron
  ENST00000541030 STRC-201 43599563-43618800 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalHeartKidneyLiverLungOvaryTestisENST00000428650ENST00000432436ENST00000440125ENST00000448437ENST00000460952ENST00000471703ENST00000485556ENST00000493750ENST00000541030
Transcript ID Adipose Adrenal Heart Kidney Liver Lung Ovary Testis
ENST00000428650 N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A
ENST00000432436 N/A N/A N/A 0.199±0.00 N/A N/A 0.120±0.00 N/A
ENST00000440125 N/A N/A N/A N/A N/A N/A N/A 0.353±0.00
ENST00000448437 0.013±0.00 N/A N/A N/A 0.208±0.00 N/A N/A 0.105±0.00
ENST00000460952 N/A N/A N/A N/A N/A N/A N/A 0.932±0.00
ENST00000471703 N/A N/A N/A N/A N/A N/A N/A 0.373±0.28
ENST00000485556 0.009±0.00 0.225±0.00 0.036±0.00 0.076±0.00 0.015±0.00 0.036±0.00 0.012±0.00 0.429±0.33
ENST00000493750 N/A N/A N/A N/A N/A N/A N/A 5.041±0.00
ENST00000541030 N/A N/A N/A N/A N/A N/A N/A 0.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000680 CIL_000680_0001 CGP 15:43533462-43604901
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_000683 CIL_000683_0001 CGP 15:43593054-43618800
CIL_000682 CIL_000682_0001 CGP 15:43599398-43668118

Gene Ontology
GO IDEvidence TypeGO Description
GO:0032426 ISS stereocilium bundle tip
GO:0050910 IEA detection of mechanical stimulus involved in sensory perception of sound
GO:0060088 ISS auditory receptor cell stereocilium organization
GO:0060091 ISS kinocilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078845 STRC stereocilin protein_coding Danio_rerio
ENSMUSG00000033498 Strc stereocilin protein_coding Mus_musculus

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