C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stereocilin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000485556 STRC-004 ENSG00000242866 9606 - 15:43599602-43613214 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalHeartKidneyLiverLungOvaryTestisENST00000485556
Transcript ID Adipose Adrenal Heart Kidney Liver Lung Ovary Testis
ENST00000485556 0.009±0.00 0.225±0.00 0.036±0.00 0.076±0.00 0.015±0.00 0.036±0.00 0.012±0.00 0.429±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000680 CIL_000680_0001 CGP 15:43533462-43604901
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_000683 CIL_000683_0001 CGP 15:43593054-43618800
CIL_000682 CIL_000682_0001 CGP 15:43599398-43668118

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038389 Strc-001 protein_coding Mus_musculus 0 1535
ENSMUST00000129136 Strc-004 nonsense_mediated_decay Mus_musculus 0 580
ENSMUST00000150332 Strc-005 retained_intron Mus_musculus 0 505
ENSMUST00000134443 Strc-003 processed_transcript Mus_musculus 0 479

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